ProFAST

package dependencies

Package suggested but not available for checking: ‘scater’

whether package can be installed

Installation failed.
See ‘/Volumes/Builds/packages/big-sur-arm64/results/4.4/ProFAST.Rcheck/00install.out’ for details.

installed package size

installed size is 15.8Mb
  sub-directories of 1Mb or more:
    data   2.2Mb
    libs  13.1Mb

examples

Running examples in ‘ProFAST-Ex.R’ failed
The error most likely occurred in:

> ### Name: diagnostic.cor.eigs
> ### Title: Determine the dimension of low dimensional embedding
> ### Aliases: diagnostic.cor.eigs diagnostic.cor.eigs.default
> ###   diagnostic.cor.eigs.Seurat
> 
> ### ** Examples
> 
> n <- 100
> p <- 50
> d <- 15
> object <- matrix(rnorm(n*d), n, d) %*% matrix(rnorm(d*p), d, p)
> diagnostic.cor.eigs(object, n.sims=2)
Warning in diagnostic.cor.eigs.default(object, n.sims = 2) :
  q_max is not less than the number of columns of X. Set it as ncol(X) - 1
Warning in irlba::irlba(A = Y/sqrt(n), nv = q_max) :
  You're computing too large a percentage of total singular values, use a standard svd instead.

 *** caught segfault ***
address 0x110, cause 'invalid permissions'

Traceback:
 1: irlba::irlba(A = X1/sqrt(n), nv = q_max)
 2: ...furrr_fn(...)
 3: .f(.x[[i]], ...)
 4: .Primitive(".Call")(list(name = "map_impl", address = <pointer: 0x6000022ab8c0>,     dll = list(name = "purr
...[truncated]...
 options$seed,     label = labels[[i]])
58: furrr_template(args = x, fn = fn, dots = dots, n = n, options = options,     progress = progress, type = type, names = names, env_globals = env_globals,     expr = expr, extract = furrr_map_extract)
59: furrr_map_template(x = .x, fn = .f, dots = list(...), options = .options,     progress = .progress, type = "list", purrr_fn_name = "map",     env_globals = .env_globals)
60: furrr::future_map(1:n.sims, corr_fun, n = n, p = p, .progress = TRUE,     .options = furrr::furrr_options(seed = seed))
61: diagnostic.cor.eigs.default(object, n.sims = 2)
62: diagnostic.cor.eigs(object, n.sims = 2)
An irrecoverable exception occurred. R is aborting now ...
Warning in file(file, open = "r") :
  cannot open file '/Volumes/Temp/tmp/RtmpqgmR3V/filee3ff5bc999cc.txt': No such file or directory
Error in file(file, open = "r") : cannot open the connection
Calls: diagnostic.cor.eigs ... furrr_map_template -> furrr_template -> poll_progress -> file
Execution halted