ProFAST
Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction
v1.9
·
Jun 4, 2026
·
GPL-3
Description
Probabilistic factor analysis for spatially-aware dimension reduction across multi-section spatial transcriptomics data with millions of spatial locations. More details can be referred to Wei Liu, et al. (2023) <doi:10.1101/2023.07.11.548486>.
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CRAN Check Status
1
ERROR
12
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | ERROR |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
ERROR
r-oldrel-macos-arm64
examples
Running examples in ‘ProFAST-Ex.R’ failed
The error most likely occurred in:
> ### Name: diagnostic.cor.eigs
> ### Title: Determine the dimension of low dimensional embedding
> ### Aliases: diagnostic.cor.eigs diagnostic.cor.eigs.default
> ### diagnostic.cor.eigs.Seurat
>
> ### ** Examples
>
> n <- 100
> p <- 50
> d <- 15
> object <- matrix(rnorm(n*d), n, d) %*% matrix(rnorm(d*p), d, p)
> diagnostic.cor.eigs(object, n.sims=2)
Warning in diagnostic.cor.eigs.default(object, n.sims = 2) :
q_max is not less than the number of columns of X. Set it as ncol(X) - 1
Warning in irlba::irlba(A = Y/sqrt(n), nv = q_max) :
You're computing too large a percentage of total singular values, use a standard svd instead.
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: irlba::irlba(A = X1/sqrt(n), nv = q_max)
2: ...furrr_fn(...)
3: .f(.x[[i]], ...)
4: .Primitive(".Call")(list(name = "map_impl", address = <pointer: 0x600001fbd1e0>, dll = list(name = "purr
...[truncated]...
options$seed, label = labels[[i]])
58: furrr_template(args = x, fn = fn, dots = dots, n = n, options = options, progress = progress, type = type, names = names, env_globals = env_globals, expr = expr, extract = furrr_map_extract)
59: furrr_map_template(x = .x, fn = .f, dots = list(...), options = .options, progress = .progress, type = "list", purrr_fn_name = "map", env_globals = .env_globals)
60: furrr::future_map(1:n.sims, corr_fun, n = n, p = p, .progress = TRUE, .options = furrr::furrr_options(seed = seed))
61: diagnostic.cor.eigs.default(object, n.sims = 2)
62: diagnostic.cor.eigs(object, n.sims = 2)
An irrecoverable exception occurred. R is aborting now ...
Warning in file(file, open = "r") :
cannot open file '/Volumes/Temp/tmp/RtmpNnyz4K/filee30a26f12130.txt': No such file or directory
Error in file(file, open = "r") : cannot open the connection
Calls: diagnostic.cor.eigs ... furrr_map_template -> furrr_template -> poll_progress -> file
Execution halted
Check History
ERROR 10 OK · 1 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE Mar 10, 2026
ERROR
r-devel-macos-arm64
examples
Running examples in ‘ProFAST-Ex.R’ failed The error most likely occurred in: > ### Name: diagnostic.cor.eigs > ### Title: Determine the dimension of low dimensional embedding > ### Aliases: diagnostic.cor.eigs diagnostic.cor.eigs.default > ### dia ...[truncated]... '/Volumes/Temp/tmp/RtmpM16AeB/fileebab204c897e.txt': No such file or directory Error in file(file, open = "r") : cannot open the connection Calls: diagnostic.cor.eigs ... furrr_map_template -> furrr_template -> poll_progress -> file Execution halted
ERROR
r-release-macos-arm64
examples
Running examples in ‘ProFAST-Ex.R’ failed The error most likely occurred in: > ### Name: diagnostic.cor.eigs > ### Title: Determine the dimension of low dimensional embedding > ### Aliases: diagnostic.cor.eigs diagnostic.cor.eigs.default > ### dia ...[truncated]... '/Volumes/Temp/tmp/Rtmpm06mWZ/file119701c0b2bf0.txt': No such file or directory Error in file(file, open = "r") : cannot open the connection Calls: diagnostic.cor.eigs ... furrr_map_template -> furrr_template -> poll_progress -> file Execution halted
ERROR
r-oldrel-macos-arm64
package dependencies
Package suggested but not available for checking: ‘scater’
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 15.8Mb
sub-directories of 1Mb or more:
data 2.2Mb
libs 13.1Mb