PresenceAbsence

Presence-Absence Model Evaluation

v1.1.11 · Jan 6, 2023 · Unlimited

Description

Provides a set of functions useful when evaluating the results of presence-absence models. Package includes functions for calculating threshold dependent measures such as confusion matrices, pcc, sensitivity, specificity, and Kappa, and produces plots of each measure as the threshold is varied. It will calculate optimal threshold choice according to a choice of optimization criteria. It also includes functions to plot the threshold independent ROC curves along with the associated AUC (area under the curve).

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CRAN Check Status

2 NOTE

12 OK

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	45.4s
r-devel-linux-x86_64-debian-gcc	NOTE	32.4s
r-devel-linux-x86_64-fedora-clang	OK	72.1s
r-devel-linux-x86_64-fedora-gcc	OK	62.6s
r-devel-macos-arm64	OK	13s
r-devel-windows-x86_64	OK	65s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	40s
r-oldrel-windows-x86_64	OK	63s
r-patched-linux-x86_64	OK	42.2s
r-release-linux-x86_64	OK	39s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	57s
r-release-windows-x86_64	OK	64s

Check details (2 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Elizabeth Freeman <elizabeth.a.freeman@usda.gov>’

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  Authors@R: person(given = "Elizabeth",
                    family = "Freeman",
                    role = c("aut", "cre"),
                    email = "elizabeth.a.freeman@usda.gov")
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Package CITATION file contains call(s) to old-style citEntry().  Please
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NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Elizabeth Freeman <elizabeth.a.freeman@usda.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Elizabeth",
                    family = "Freeman",
                    role = c("aut", "cre"),
                    email = "elizabeth.a.freeman@usda.gov")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Elizabeth Freeman <elizabeth.a.freeman@usda.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Elizabeth",
                    family = "Freeman",
                    role = c("aut", "cre"),
                    email = "elizabeth.a.freeman@usda.gov")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Elizabeth Freeman <elizabeth.a.freeman@usda.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Elizabeth",
                    family = "Freeman",
                    role = c("aut", "cre"),
                    email = "elizabeth.a.freeman@usda.gov")
as necessary.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Reverse Dependencies (7)

imports

ModelMap RRgeo biomod2 ecospat

suggests

BiodiversityR ebirdst spind

Dependency Network

Version History

new 1.1.11 Mar 10, 2026

updated 1.1.11 ← 1.1.10 diff Jan 6, 2023

updated 1.1.10 ← 1.1.9 diff Mar 1, 2022

updated 1.1.9 ← 1.1.5 diff Aug 16, 2012

updated 1.1.5 ← 1.1.4 diff Dec 6, 2010

updated 1.1.4 ← 1.1.3 diff Apr 16, 2010

updated 1.1.3 ← 1.1.2 diff Mar 16, 2009

updated 1.1.2 ← 1.1.1 diff Mar 27, 2008

updated 1.1.1 ← 1.1.0 diff Jan 6, 2008

updated 1.1.0 ← 1.0.0 diff Sep 12, 2007

new 1.0.0 Feb 22, 2007