R Observatory: Metrics for PhysActBedRest version 1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

PhysActBedRest

1.1Package record

Marks Periods of 'Bedrest' in Actigraph Accelerometer Data

0packages dependsuggested by 1

2.7Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by J. Dustin TracyCRAN page ↗

Contains a function to categorize accelerometer readings collected in free-living (e.g., for 24 hours/day for 7 days), preprocessed and compressed as counts (unit-less value) in a specified time period termed epoch (e.g., 1 minute) as either bedrest (sleep) or active. The input is a matrix with a timestamp column and a column with number of counts per epoch. The output is the same dataframe with an additional column termed bedrest. In the bedrest column each line (epoch) contains a function-generated classification 'br' or 'a' denoting bedrest/sleep and activity, respectively. The package is designed to be used after wear/nonwear marking function in the 'PhysicalActivity' package. Version 1.1 adds preschool thresholds and corrects for possible errors in algorithm implementation.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("PhysActBedRest", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-physactbedrest

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-PhysActBedRest

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-PhysActBedRest

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘J. Dustin Tracy <tracy@chapman.edu>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("J.", "Dustin"),
                      family = "Tracy",
                      role = c("aut", "cre"),
                      email = "tracy@chapman.edu"),
               person(given = "Zhiyi",
                      family = "Xu",
                      role = "aut"),
               person(given = "Sari",
                      family = "Acra",
                      role = "aut"),
               person(given = c("Kong", "Y."),
                      family = "Chen",
                      role = "aut"),
               person(given = c("Maciej", "S."),
                      family = "Buchowski",
                      role = "aut"),
               person(given = "Thomas",
                      family = "Donnelly",
                      role = "aut"))
as necessary.

CRAN check page ↗

Slowest check: 1.1 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-09-08
ERROR10 OK, 2 NOTE, 1 ERROR2026-09-07
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 3
Examples that run: 100%1 run in a plain check
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 33%

How these are measured

Downloads

2.7K

CRAN downloads in the past year

Rank #19,395 · ~7/day · ~223/mo

Releases R versions

Daily download trend is not available in this view yet.

24930 days

67890 days

2.7K1 year

Compare downloads with other packages →

Also on69 r2u1 autocran

How downloads are counted

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Installing PhysActBedRest adds 13 packages (9 with compiled code, 15 MB of source tarballs). Heaviest: stringi 11 MB, vctrs 1.0 MB, rlang 766 KB.

Depends (3)

R >= 3.5.0chron stringr

Imports (1)

lubridate

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

accelEE

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (6)

· added in 1.1

Maintainer since 1.0 (2016)

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.1Latest
record
2020-09-14 · current release · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.0
record
2016-04-06
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2016-04-06
Total releases: 2 / 10 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.5.0
Bundled data: 18 KB / 2 files
Download size: 19 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("PhysActBedRest")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for PhysActBedRest version 1.1 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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