R Observatory: Metrics for PdPDB version 2.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2026-04-30. Its history is shown below.

Reason: email to the maintainer is undeliverable

Details below reflect version 2.0.1, its last release before removal.

PdPDB

2.0.1Package record

Pattern Discovery in PDB Structures of Metalloproteins

0packages depend

881downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Luca BelmonteCRAN page ↗

Looks for amino acid and/or nucleotide patterns and/or small ligands coordinated to a given prosthetic centre. Files have to be in the local file system and contain proper extension.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/PdPDB/PdPDB_2.0.1.tar.gz"
pkgFile <- "PdPDB_2.0.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2.0.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Status changes

NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 1
Examples that run: 100%1 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 100%

How these are measured

Downloads

881

CRAN downloads in the past year

Rank #25,761 · ~2/day · ~73/mo

Releases R versions

Daily download trend is not available in this view yet.

030 days

090 days

8811 year

Compare downloads with other packages →

Also on65 r2u4 autocran

How downloads are counted

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (7)

plyrstatsutilsgraphicsgrDevicesdendextend tseries

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (2)

Luca Belmonte

Contributor

Sheref S. Mansy

Contributor

Maintainer since 1.0 (2016)

Releases (2)

Pick two releases to compare their code metrics.

archivedRemoved from CRAN
2026-04-30
email to the maintainer is undeliverable
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
2.0.1
record
2017-11-10 · diff ↗
R
R 3.4.0 released · 2017-04-21
1.0
record
2016-11-18
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-11-18
Total releases: 2 / 10 yrs
License: MIT + file LICENSE OSI
Download size: 22 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("PdPDB")

Format

Belmonte, L., & Mansy, S. S. (n.d.). PdPDB: Pattern Discovery in PDB Structures of Metalloproteins (Version 2.0.1) [Computer software]. Retrieved October 27, 2026, from https://CRAN.R-project.org/package=PdPDB

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for PdPDB version 2.0.1 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →