R Observatory: Metrics for PRIMEplus version 1.0.16

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

PRIMEplus

1.0.16Package record

Study Design for Immunotherapy Clinical Trials

0packages depend

2Kdownloads / year

–test coverage

12/13flavors OK

Overview

About

Maintained by Bill WheelerCRAN page ↗

Perform sample size, power calculation and subsequent analysis for Immuno-oncology (IO) trials composed of responders and non-responders.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("PRIMEplus", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-primeplus

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-PRIMEplus

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-PRIMEplus

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

1ERROR12OK

Check messages

ERRORexamplesr-devel-linux-x86_64-debian-gcc

Running examples in ‘PRIMEplus-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: PRIMEplus.EM
> ### Title: EM algorithm
> ### Aliases: PRIMEplus.EM
> ### Keywords: EM
> 
> ### ** Examples
> 
>   data(data, package="PRIMEplus")
>   effp  <- c(0.3, 0.3)
>   beta0 <- c(log(0.4), log(0.6))
>   ret   <- PRIMEplus.EM(data, effp, beta0)
Error in a$specials[[i]] : subscript out of bounds
Calls: PRIMEplus.EM ... survfit.coxph -> model.matrix.coxph -> delete.response -> off
Execution halted

CRAN check page ↗

Slowest check: 2.8 min · r-devel-windows-x86_64

Status changes

ERROR12 OK, 1 ERROR2026-10-24
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.16

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 9includes a package overview page
Examples that run: 100%6 run in a plain check
Exported functions with examples: 71%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 89%

How these are measured

Downloads

2K

CRAN downloads in the past year

Rank #24,202 · ~5/day · ~163/mo

Releases R versions

Daily download trend is not available in this view yet.

19530 days

51790 days

2K1 year

Compare downloads with other packages →

Also on344 r2u3 autocran

How downloads are counted

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Installing PRIMEplus adds 14 packages (10 with compiled code, 6.2 MB of source tarballs). Heaviest: mvtnorm 1.0 MB, vctrs 1.0 MB, msm 972 KB.

Depends (3)

R >= 3.5survivalmsm

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Bill Wheeler

Maintainer since 1.0.16 (2024)

Zhu Bin

Author

Yongsoek Park

Author

Zhenzhen Xu

Author

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.16Latest
record
2024-01-10 · current release
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2024-01-10
Total releases: 1 / 2 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5
Bundled data: 5.3 KB / 1 file
Download size: 28 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("PRIMEplus")

Format

Wheeler, B., Bin, Z., Park, Y., & Xu, Z. (2024). PRIMEplus: Study Design for Immunotherapy Clinical Trials (Version 1.0.16) [Computer software]. https://doi.org/10.32614/CRAN.package.PRIMEplus

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for PRIMEplus version 1.0.16 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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