R Observatory: Metrics for PHYLOGR version 1.0.12

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

PHYLOGR

1.0.12Package record

Functions for Phylogenetically Based Statistical Analyses

0packages depend

3.2Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Ramon Diaz-UriarteCRAN page ↗Website ↗

Manipulation and analysis of phylogenetically simulated data sets and phylogenetically based analyses using GLS.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("PHYLOGR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-phylogr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-PHYLOGR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-PHYLOGR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.2 min · r-release-windows-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-05-11

Show 2 earlier changesHide 2 earlier changes

WARNING12 OK, 1 WARNING2026-05-10
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.12

READMENoVignettesNoNEWSYes · 67% structuredCitation fileNoWebsiteYes

Help pages: 26
Examples that run: 100%24 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 73%

How these are measured

Downloads

3.2K

CRAN downloads in the past year

Rank #15,090 · ~9/day · ~265/mo

Releases R versions

Daily download trend is not available in this view yet.

33730 days

80990 days

3.2K1 year

Compare downloads with other packages →

Also on80 r2u10 autocran136 c2d4u

How downloads are counted

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Installing PHYLOGR adds no packages beyond those that come with R.

Depends (1)

R >= 1.8.1

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Ramon Diaz-Uriarte

Author, Maintainer since at least 1.0.5 (2007)

Theodore Garland, Jr

Author · added in 1.0.12

Listed in earlier versions (2)

Theodore Garland

no longer listed · 1.0.5 to 1.0.11

Jr

no longer listed · 1.0.5 to 1.0.11

Releases (20)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
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R 4.4.0 released · 2024-04-24
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R 4.3.0 released · 2023-04-21
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R 4.2.0 released · 2022-04-22
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R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
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R 3.5.0 released · 2018-04-23
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R 3.4.0 released · 2017-04-21
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R 3.3.0 released · 2016-05-03
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R 3.2.0 released · 2015-04-16
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R 3.1.0 released · 2014-04-10
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R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31

Show 39 earlier eventsHide 39 earlier events

R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
2.12.0Latest
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2010-08-09 · current release · diff ↗
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R 2.11.0 released · 2010-04-22
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R 2.10.0 released · 2009-10-26
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R 2.9.0 released · 2009-04-17
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R 2.8.0 released · 2008-10-20
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R 2.7.0 released · 2008-04-22
2.10.0
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2007-10-09 · diff ↗
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R 2.6.0 released · 2007-10-03
2.6.0
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2007-09-25 · diff ↗
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R 2.5.0 released · 2007-04-24
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R 2.4.0 released · 2006-10-03
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R 2.3.0 released · 2006-04-24
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R 2.2.0 released · 2005-10-06
2.1.1
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2005-05-01 · diff ↗
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R 2.1.0 released · 2005-04-18
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R 2.0.0 released · 2004-10-04
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R 1.9.0 released · 2004-04-12
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R 1.8.0 released · 2003-10-08
2.0.0
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2003-08-26 · diff ↗
1.0.12
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2026-01-31 · diff ↗
1.0.11
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2020-04-14 · diff ↗
1.0.10
record
2018-03-20 · diff ↗ ·
removed 1 export
pattern:.

added 11 exports
cancor.phylog, lm.phylog, read.pdi.data, cor.origin, matrix.D, read.phylip.data, phylog.gls.fit, read.phylog.matrix, read.sim.data, read.inp.data, prcomp.phylog
1.0.8
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2014-11-10 · diff ↗
1.0.7
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2012-10-29 · diff ↗ ·
added 1 export
pattern:.
1.0.6
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2007-10-09 · diff ↗
1.0.5
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2007-09-25 · diff ↗
1.0.4
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2005-04-01 · diff ↗
1.0.3
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2004-03-30 · diff ↗
1.0.2
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2003-07-28 · diff ↗
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R 1.7.0 released · 2003-04-16
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R 1.6.0 released · 2002-10-01
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R 1.5.0 released · 2002-04-29
1.0.1
record
2001-12-24 · diff ↗
1.0
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2001-05-02 · diff ↗
0.91
record
2000-11-13 · diff ↗
0.9
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2000-11-01 · diff ↗
0.1
record
2000-08-31

Package metadata

First published: 2000-08-31
Total releases: 20 / 26 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 1.8.1
Bundled data: 47 KB / 7 files
Download size: 738 KB

Appears in task views

Phylogenetics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("PHYLOGR")

Format

Diaz-Uriarte, R., & Garland, Jr, T. (2026). PHYLOGR: Functions for Phylogenetically Based Statistical Analyses (Version 1.0.12) [Computer software]. https://doi.org/10.32614/CRAN.package.PHYLOGR

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for PHYLOGR version 1.0.12 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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