Skip to content

PGRdup

Discover Probable Duplicates in Plant Genetic Resources Collections

v0.2.4.0 · Dec 14, 2025 · GPL-2 | GPL-3
CRAN GitHub Mirror

Description

Provides functions to aid the identification of probable/possible duplicates in Plant Genetic Resources (PGR) collections using 'passport databases' comprising of information records of each constituent sample. These include methods for cleaning the data, creation of a searchable Key Word in Context (KWIC) index of keywords associated with sample records and the identification of nearly identical records with similar information by fuzzy, phonetic and semantic matching of keywords.

Downloads

322

Last 30 days

12185th

953

Last 90 days

4.4K

Last year

Trend: -13.7% (30d vs prior 30d)

CRAN Check Status

1 ERROR
13 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 ERROR
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (1 non-OK)
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'Introduction.Rmd' using rmarkdown_notangle
! Package pdftex.def Error: File `f90e436221651704be7c1820f5189d66aa0013c8.pdf'
 not found: using draft setting.

Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/PGRdup.Rcheck/vign_test/PGRdup/vignettes/Introduction.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Introduction.log for more info.
--- failed re-building 'Introduction.Rmd'

SUMMARY: processing the following file failed:
  'Introduction.Rmd'

Error: Vignette re-building failed.
Execution halted

Check History

ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'Introduction.Rmd' using rmarkdown_notangle
! Package pdftex.def Error: File `f90e436221651704be7c1820f5189d66aa0013c8.pdf'
 not found: using draft setting.

Error: processing vignette 'Introduction.
...[truncated]...
ihui.org/tinytex/r/#debugging for debugging tips. See Introduction.log for more info.
--- failed re-building 'Introduction.Rmd'

SUMMARY: processing the following file failed:
  'Introduction.Rmd'

Error: Vignette re-building failed.
Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies data.table igraph stringdist stringi ggplot2 gridExtra PGRdup

Version History

new 0.2.4.0 Mar 10, 2026
updated 0.2.4.0 ← 0.2.3.9 diff Dec 13, 2025
updated 0.2.3.9 ← 0.2.3.8 diff Aug 31, 2023
updated 0.2.3.8 ← 0.2.3.7 diff May 22, 2023
updated 0.2.3.7 ← 0.2.3.6 diff Feb 16, 2021
updated 0.2.3.6 ← 0.2.3.5 diff Jul 26, 2020
updated 0.2.3.5 ← 0.2.3.4 diff Feb 9, 2020
updated 0.2.3.4 ← 0.2.3.3 diff Sep 18, 2019
updated 0.2.3.3 ← 0.2.3.2 diff Jan 12, 2018
updated 0.2.3.2 ← 0.2.3.1 diff Aug 4, 2017
updated 0.2.3.1 ← 0.2.3 diff Mar 14, 2017
updated 0.2.3 ← 0.2.2.1 diff Jan 31, 2017
updated 0.2.2.1 ← 0.2.2 diff Mar 8, 2016
updated 0.2.2 ← 0.2.1 diff Mar 4, 2016
updated 0.2.1 ← 0.2 diff Jul 22, 2015
new 0.2 Apr 13, 2015