R Observatory: Metrics for PAutilities version 1.3.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

PAutilities

1.3.0Package record

Streamline Physical Activity Research

3packages depend

4.7Kdownloads / year

23.4%test coverage

8/13flavors OK

Overview

About

Maintained by Paul R. HibbingCRAN page ↗GitHub ↗Issues ↗

Functions that support a broad range of common tasks in physical activity research, including but not limited to creation of Bland-Altman plots (doi:10.1136/bmj.313.7049.106), metabolic calculations such as basal metabolic rate predictions (https://europepmc.org/article/med/4044297/reloa), demographic calculations such as age-for-body-mass-index percentile (https://www.cdc.gov/growthcharts/cdc_charts.htm), and analysis of bout detection algorithm performance (https://pubmed.ncbi.nlm.nih.gov/34258524/).

Changes in 1.3.0

What's new:

Reversed operand order when calculating bias in ba_analysis
Added a reintegration function
Updated ggplot2 code and dependency
Modernized roxygen2 usage

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("PAutilities", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("paulhibbing/PAutilities")

Development version from paulhibbing/PAutilities. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pautilities

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-PAutilities

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-PAutilities

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

5NOTE8OK

Check messages

NOTER code for possible problemsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Found calls to structure() using deprecated special names:
  PAutilities/tests/testthat/test_cvd.R (.Label: 1)
'.Label' should be changed to 'levels'.

CRAN check page ↗

Slowest check: 3.8 min · r-devel-windows-x86_64

Status changes

NOTE8 OK, 5 NOTE2026-09-08
ERROR8 OK, 4 NOTE, 1 ERROR2026-09-07
NOTE10 OK, 3 NOTE2026-07-16
OK14 OK2026-04-22
ERROR13 OK, 1 ERROR2026-04-18

Show 5 earlier changesHide 5 earlier changes

OK14 OK2026-04-10
ERROR13 OK, 1 ERROR2026-04-09
OK14 OK2026-04-06
ERROR13 OK, 1 ERROR2026-04-04
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.0

READMEYes · 155 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 1.3.0Citation fileYes · software entry onlyWebsitenot declared in DESCRIPTION

Help pages: 52 (18 internal)includes a package overview page
Examples that run: 100%34 run in a plain check
Exported functions with examples: 100%
Documented parameters: 95%
Return-value docs: 100%
Help pages citing references: 17%

Vignettes (1)

The Transition Pairing Method HTML

How these are measured

Downloads

4.7K

CRAN downloads in the past year

Rank #7,596 · ~13/day · ~389/mo

Releases R versions

Daily download trend is not available in this view yet.

47130 days

1.2K90 days

4.7K1 year

Compare downloads with other packages →

Also on380 r2u2 autocran

How downloads are counted

Repository

paulhibbing/pautilities ↗Account: paulhibbing

1Stars

3Forks

1Open issues

1Open PRs

7Releases

233Commits

5Commit identities

233 commits · Last activity 2026-03-14

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 12
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2022-04-27 · 12026-07-07 · 1

How these are measured

PracticesBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/paulhibbing/pautilities on 2026-10-21.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Installing PAutilities adds 40 packages (25 with compiled code, 32 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, Rcpp 1.8 MB.

Depends (1)

R >= 3.5.0

Imports (13)

dplyr equivalence ggplot2graphicslazyeval lubridate magrittrmethodsreshape2 rlangstatsutilsRcpp

LinkingTo (1)

Rcpp

Suggests (4)

testthat knitr rmarkdown matchingMarkets

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

3direct

0indirect

Imports 3

Depends, Imports or LinkingTo, most downloaded first

TwoRegression accelEE Sojourn

How these are counted

Code & Tests

Datasets

People & History

People (2)

Paul R. Hibbing

Author, Maintainer since 0.1.2 (2019)

Centers for Disease Control and Prevention

Contributor

Listed in earlier versions (1)

Paul R.

no longer listed · 0.1.2 to 1.3.0

Releases (8)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
unarchivedReturned to CRAN
2025-06-11
1.3.0Latest
record
2025-06-11 · current release · diff ↗ ·
added 1 export
reintegrate
1.2.1
record
2025-06-11 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2023-04-19
issues were not corrected in time
1.1.0
record
2022-08-21 · diff ↗ ·
added 9 exports
ba_analysis, cvd_risk, df_continuous, df_reorder, epoch_length_sec, full_days, get_bmi, get_ree, residual_adjust
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.0.1
record
2020-05-17 · diff ↗ ·
added 3 exports
get_indices, rolling_groups, weight_status
R
R 4.0.0 released · 2020-04-24
0.3.1
record
2019-12-16 · diff ↗
0.3.0
record
2019-10-29 · diff ↗ ·
added 4 exports
get_intensity, index_runs, paired_equivalence_test, spurious_curve
0.2.0
record
2019-07-10 · diff ↗ ·
added 4 exports
get_duration, manage_procedure, rmr_sliding, test_errors

Show 3 earlier eventsHide 3 earlier events

R
R 3.6.0 released · 2019-04-26
0.1.2
record
2019-03-06
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-03-06
Total releases: 8 / 7 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 79 KB / 1 file
Download size: 189 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("PAutilities")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for PAutilities version 1.3.0 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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