OncoSubtype

Predict Cancer Subtypes Based on TCGA Data using Machine Learning Method

v1.0.0 · Mar 22, 2024 · GPL-3

CRAN GitHub Mirror

Description

Provide functionality for cancer subtyping using nearest centroids or machine learning methods based on TCGA data.

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CRAN Check Status

2 NOTE

11 OK

Show all 13 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	435.4s
r-devel-linux-x86_64-debian-gcc	NOTE	316.1s
r-devel-linux-x86_64-fedora-clang	OK	689.8s
r-devel-linux-x86_64-fedora-gcc	OK	686.7s
r-devel-windows-x86_64	OK	378s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	369s
r-oldrel-windows-x86_64	OK	506s
r-patched-linux-x86_64	OK	408.2s
r-release-linux-x86_64	OK
r-release-macos-arm64	OK	120s
r-release-macos-x86_64	OK	421s
r-release-windows-x86_64	OK	375s

Check details (2 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

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                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

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Check History

NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

ERROR 11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

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  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
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ERROR r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

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  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
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  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

ERROR 10 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 3, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

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  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

ERROR r-release-linux-x86_64

package dependencies

Package required but not available: ‘SummarizedExperiment’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 2, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

ERROR 9 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 25, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

ERROR r-release-macos-x86_64

package dependencies

Package required but not available: ‘caret’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 3, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 2, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

ERROR r-devel-linux-x86_64-fedora-gcc

tests

Running ‘test_subtype.R’ [24s/54s]
Running the tests in ‘tests/test_subtype.R’ failed.
Complete output:
  > library(testthat)
  > library(OncoSubtype)
  Loading required package: SummarizedExperiment
  Loading required package: MatrixGenerics
  Loadi
...[truncated]...
..)
   2.   └─testthat:::test_code(code, parent.frame())
   3.     ├─withr (local) `<fn>`()
   4.     └─reporter$end_test(context = reporter$.context, test = test)
   5.       └─cli::cli_abort(...)
   6.         └─rlang::abort(...)
  Execution halted

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Dadong Zhang <dadong.zhang.shared@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Dadong",
                    family = "Zhang",
                    role = c("aut", "cre"),
                    email = "dadong.zhang.shared@gmail.com")
as necessary.

Dependency Network

Version History

1 tracked

new 1.0.0 Mar 10, 2026

R Observatory began tracking this package on Mar 10, 2026; it first appeared on CRAN Mar 22, 2024. Releases before tracking aren’t shown.