R Observatory: Metrics for OmicsPLS version 2.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

OmicsPLS

2.1.0

Data Integration with Two-Way Orthogonal Partial Least Squares

1packages depend

4.6Kdownloads / year

87.2%test coverage

13/13checks pass

Overview

About

Maintained by Said el BouhaddaniFirst published 2017-05-097 releasesCRAN page ↗

Performs the O2PLS data integration method for two datasets, yielding joint and data-specific parts for each dataset. The algorithm automatically switches to a memory-efficient approach to fit O2PLS to high dimensional data. It provides a rigorous and a faster alternative cross-validation method to select the number of components, as well as functions to report proportions of explained variation and to construct plots of the results. See the software article by el Bouhaddani et al (2018) doi:10.1186/s12859-018-2371-3, and Trygg and Wold (2003) doi:10.1002/cem.775. It also performs Sparse Group (Penalized) O2PLS, see Gu et al (2020) doi:10.1186/s12859-021-03958-3 and cross-validation for the degree of sparsity.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("OmicsPLS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-omicspls

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-OmicsPLS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-OmicsPLS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.3 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.04

87.2%

Coverage · measured lines

100%

Documentation · exports

9

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-05-12
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-09
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 75%
References docs: 0%

Downloads

4.6K

CRAN downloads in the past year

Rank #9,012 · ~13/day · ~381/mo

Releases R versions

Daily download trend is not available in this view yet.

27430 days

1K90 days

4.6K1 year

Compare downloads with other packages →

Also on107 r2u25 autocran

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (9)

graphicsstatsdplyr ggplot2parallelmagrittr tibble softImpute withr

LinkingTo (0)

none

Suggests (4)

testthat knitr rmarkdown gplots

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

MMINP

Code & Tests

People & History

People (6)

Maintainer (1)

Said el Bouhaddani

Author, Maintainer

Authors (6)

Said el Bouhaddani

Author, Maintainer

Zander Gu

Author · added in 2.1.0

Jeanine Houwing-Duistermaat

Author

Geurt Jongbloed

Author

Szymon Kielbasa

Author

Hae-Won Uh

Author

Listed in earlier versions (1)

Zhujie Gu

no longer listed · 2.0.2

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
2.1.0Latest
2025-04-01 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
2.0.2
2021-05-19 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.2.0
2019-07-24 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
1.1.0
2018-01-22 · diff ↗
1.0.3
2017-08-08 · diff ↗
1.0.2
2017-07-08 · diff ↗
1.0.1
2017-05-09

Show 1 earlier events

R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-05-09
Total releases: 7 / 9 yrs
License: GPL-3 OSI
Download size: 188 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("OmicsPLS")

Format

el Bouhaddani, S., Gu, Z., Houwing-Duistermaat, J., Jongbloed, G., Kielbasa, S., & Uh, H. (2025). OmicsPLS: Data Integration with Two-Way Orthogonal Partial Least Squares (Version 2.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.OmicsPLS

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for OmicsPLS version 2.1.0 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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