OlinkAnalyzeVignettes

1.0.1

Vignettes for Analyzing Data using 'OlinkAnalyze'

0packages depend

428downloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Kathleen NevolaFirst published 2026-06-081 releasesCRAN page ↗GitHub ↗

Exemplifying analysis of large-scale protein data from the 'Olink platform', primarily relative protein expression data that has been exported from 'Olink NPX Software', as well as QUANT data from 'Olink'. QUANT data is log-transformed. Materials focus on reading data, demonstrating data wrangling and quality control analysis, performing statistical analysis and generating figures to visualize the results of the statistical analysis. The goal of this package is to guide users extract biological insights from large-scale protein data run on the 'Olink platform'. More information on 'Olink' data can be found at https://olink.com/.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("OlinkAnalyzeVignettes", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Olink-Proteomics/OlinkRPackage")

Development version from Olink-Proteomics/OlinkRPackage. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-olinkanalyzevignettes

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-OlinkAnalyzeVignettes

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.3 min · r-devel-linux-x86_64-fedora-clang

Check history

OK2026-06-09
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

428

CRAN downloads in the past year

Rank #23,612 · ~1/day · ~36/mo

OlinkAnalyzeVignettes Releases R versions

Daily download trend is not available in this view yet.

23130 days

42890 days

4281 year

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Also on1 r2u24 autocran

Repository

GitHub ↗ olink-proteomics/olinkrpackage

131Stars

36Forks

3Open issues

5Open PRs

37Releases

3,140Commits

29Contributors

olinkproteomicsproteomics-data-analysisrrstats

License AGPL-3.0 · 3,140 commits · Last activity 2026-07-23 · 0% stars, 30d

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/olink-proteomics/olinkrpackage on 2026-07-19.

Continuous integration (1)

GitHub Actions

Docs source (1)

README.Rmd

Lint, format, editor (2)

lintrRStudio project

Governance and community (1)

Issue templates

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Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (0)

none

LinkingTo (0)

none

Suggests (9)

dplyr ggplot2 ggpubr ggrepel kableExtra knitr OlinkAnalyze stringr tidyr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (24)

Maintainer (1)

Kathleen Nevola

Author, Maintainer

Authors (15)

Kathleen Nevola

Author, Maintainer

Christoffer Cambronero

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Contributors (7)

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Funders (1)

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Contractor

Package Timeline

1 release. R releases are shown for context.

1.0.1Latest
2026-06-08 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-06-08
Total releases: 1 / 1 yrs
License: AGPL (>= 3) OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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