R Observatory: Metrics for OhdsiReportGenerator version 2.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

OhdsiReportGenerator

2.3.1Package record

Observational Health Data Sciences and Informatics Report Generator

0packages depend

4.9Kdownloads / year

87.2%test coverage

13/13flavors OK

Overview

About

Maintained by Jenna RepsCRAN page ↗GitHub ↗Website ↗Issues ↗

Extract results into R from the Observational Health Data Sciences and Informatics result database (see https://ohdsi.github.io/Strategus/results-schema/index.html) and generate reports/presentations via 'quarto' that summarize results in HTML format. Learn more about 'OhdsiReportGenerator' at https://ohdsi.github.io/OhdsiReportGenerator/.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("OhdsiReportGenerator", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("OHDSI/OhdsiReportGenerator")

Development version from OHDSI/OhdsiReportGenerator. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ohdsireportgenerator

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-OhdsiReportGenerator

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-OhdsiReportGenerator

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 4.5 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-05-12

Show 4 earlier changesHide 4 earlier changes

WARNING12 OK, 1 WARNING2026-05-11
OK14 OK2026-04-06
ERROR13 OK, 1 ERROR2026-04-04
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.3.1

README· In the repository, left out of the releaseVignettesYes · 1 · dynamicNEWS· In the repository, left out of the releaseCitation fileNoWebsiteYes · pkgdown

Help pages: 94includes a package overview page
Examples that run: 100%79 run in a plain check
Exported functions with examples: 87%
Documented parameters: 99%
Return-value docs: 96%
Help pages citing references: 0%

Vignettes (1)

guide HTML

How these are measured

Downloads

4.9K

CRAN downloads in the past year

Rank #7,608 · ~13/day · ~405/mo

Releases R versions

Daily download trend is not available in this view yet.

44630 days

1.2K90 days

4.9K1 year

Compare downloads with other packages →

Also on143 r2u1 autocran

How downloads are counted

Repository

ohdsi/ohdsireportgenerator ↗Organization: OHDSI

1Stars

4Forks

2Open issues

2Open PRs

7Releases

200Commits

6Commit identities

200 commits · Last activity 2026-08-03

Responsiveness

How these are sampled

PRs merged (all time): 91%
Median days to close, 50 most recently updated closed issues: 35
Median days to close, 50 most recently updated closed PRs: 0

Forks over time

2025-04-14 · 12026-09-01 · 4

How these are measured

PracticesBeta

7 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/ohdsi/ohdsireportgenerator on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows

Docs source (3)

pkgdown

GitHub Pages site last deployed 2026-09-23 · The repository has a site deploy workflow

Coverage (1)

Coverage reporting

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Installing OhdsiReportGenerator adds 104 packages (51 with compiled code, 81 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB.

Depends (1)

R >= 4.1.0

Imports (16)

CirceR DatabaseConnector forestploter dplyr ggplot2grDevicesgridgt gtExtras kableExtra ParallelLogger quarto rlang rmarkdown SqlRender tidyr

LinkingTo (0)

none

Suggests (6)

htmltools knitr markdown ResultModelManager RSQLite testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (2)

Jenna Reps

Author, Maintainer since 1.0.1 (2025)

Anthony Sena

Author

Releases (7)

Pick two releases to compare their code metrics.

2.3.1Latest
record
2026-08-03 · current release · diff ↗ ·
removed 9 exports
getCaseTargetCounts, getCharacterizationCohortBinary, getCharacterizationCohortContinuous, getCharacterizationOutcomes, getCharacterizationTargets, getIncidenceOutcomes, getIncidenceTargets, getTargetBinaryFeatures, getTargetContinuousFeatures

added 12 exports
characterizationCompareBinary, characterizationCompareContinuous, getCharacterizationCaseSettings, getCharacterizationTargetSettings, getContinuousTargetBaseline, getIncidenceTargetSettings, getNonCaseCounts, getOutcomesUsedInCharacterization, getOutcomesUsedInIncidence, getTargetCounts, getTargetsUsedInCharacterization, getTargetsUsedInIncidence
2.2.0
record
2026-05-16 · diff ↗ ·
removed 3 exports
generatePresentation, generatePresentationMultiple, printReactable

added 6 exports
createCharacterizationIndexes, createCohortIndexes, createIncidenceIndexes, createSccsIndexes, getBinaryTargetBaseline, viewIncidenceRate
R
R 4.6.0 released · 2026-04-24
2.1.0
record
2026-03-25 · diff ↗ ·
removed 3 exports
getCaseBinaryFeatures, getCaseContinuousFeatures, getCaseTargetBinaryFeatures

added 8 exports
getAnalysisCohorts, getCohortAttrition, getCohortSubsetAttrition, getEventDuration, getSubsetText, getTreatmentPathways, processCohortDefinitionsForQuarto, restrictCohortDefinitionsForQuarto
2.0.2
record
2025-12-18 · diff ↗ ·
removed 1 export
getTargetCounts

added 36 exports
createPredictionReport, generateSummaryPredictionReport, getCaseTargetBinaryFeatures, getCaseTargetCounts, getCharacterizationCohortBinary, getCharacterizationCohortContinuous, getCharacterizationOutcomes, getCharacterizationTargets, getCmNegativeControlEstimates, getCmOutcomes, getCmPropensityModel, getCmTable, getCmTargets, getCohortCounts, getCohortInclusionRules, getCohortInclusionStats, getCohortInclusionSummary, getCohortMeta, getDatabaseDetails, getDechallengeRechallengeFails, getFullPredictionPerformances, getIncidenceOutcomes, getIncidenceTargets, getOutcomeTable, getPredictionAggregateTopPredictors, getPredictionCovariates, getPredictionLift, getPredictionOutcomes, getPredictionTargets, getSccsModel and 6 more
1.1.1
record
2025-05-22 · diff ↗
1.1.0
record
2025-05-07 · diff ↗ ·
added 4 exports
addTarColumn, formatBinaryCovariateName, generateFullReport, generatePresentation
R
R 4.5.0 released · 2025-04-11
1.0.1
record
2025-02-26
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2025-02-26
Total releases: 7 / 1 yrs
License: Apache License 2.0 OSI
Minimum R: ≥ 4.1.0
Download size: 1.9 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("OhdsiReportGenerator")

Format

Reps, J., & Sena, A. (2026). OhdsiReportGenerator: Observational Health Data Sciences and Informatics Report Generator (Version 2.3.1) [Computer software]. https://doi.org/10.32614/CRAN.package.OhdsiReportGenerator

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for OhdsiReportGenerator version 2.3.1 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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