R Observatory: Metrics for OdysseusPathwayModule version 0.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

OdysseusPathwayModule

0.0.1Package record

Cohort Pathway Analysis with Pre-Index Event Support

0packages depend

2.1Kdownloads / year

91.8%test coverage

13/13flavors OK

Overview

About

Maintained by Alexander AlexeyukCRAN page ↗

Provides cohort pathway analysis for Observational Medical Outcomes Partnership (OMOP) Common Data Model databases, including both standard (post-index) and pre-index pathway analyses. The pre-index analysis identifies sequences of events occurring in a lookback window before the target cohort index date. Built on the 'CohortPathways' analysis framework originally developed by Christopher Knoll and the Observational Health Data Sciences and Informatics community through 'WebAPI'. Methodological background and the originating implementation are described in https://github.com/OHDSI/CohortPathways.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("OdysseusPathwayModule", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-odysseuspathwaymodule

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-OdysseusPathwayModule

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-OdysseusPathwayModule

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.1 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09

Show 2 earlier changesHide 2 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK8 OK2026-04-22

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.0.1

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 5 (2 internal)includes a package overview page
Examples that run: 67%2 run in a plain check (2 of them under a condition) · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

Using OdysseusPathwayModule HTML

How these are measured

Downloads

2.1K

CRAN downloads in the past year

Rank #13,574 · ~6/day · ~178/mo

Releases R versions

Daily download trend is not available in this view yet.

31230 days

85590 days

2.1K1 year

Compare downloads with other packages →

Also on38 r2u1 autocran

How downloads are counted

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing OdysseusPathwayModule adds 42 packages (24 with compiled code, 25 MB of source tarballs). Heaviest: stringi 11 MB, Rcpp 1.8 MB, vctrs 1.0 MB.

Depends (1)

R >= 4.1.0

Imports (2)

DatabaseConnector SqlRender

LinkingTo (0)

none

Suggests (5)

Eunomia igraph knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Alexander Alexeyuk

Author, Maintainer since 0.0.1 (2026)

Releases (1)

R
R 4.6.0 released · 2026-04-24
0.0.1Latest
record
2026-04-21 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-04-21
Total releases: 1 / 1 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1.0
Download size: 44 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("OdysseusPathwayModule")

Format

Alexeyuk, A. (2026). OdysseusPathwayModule: Cohort Pathway Analysis with Pre-Index Event Support (Version 0.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.OdysseusPathwayModule

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for OdysseusPathwayModule version 0.0.1 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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