R Observatory: Metrics for OdysseusCharacterizationModule version 0.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

OdysseusCharacterizationModule

0.0.1Package record

Handy and Minimalistic Common Data Model Characterization

0packages depend

2Kdownloads / year

94.5%test coverage

13/13flavors OK

Overview

About

Maintained by Alexander AlexeyukCRAN page ↗

Extracts covariates from Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) domains using an R-only pipeline. Supports configurable temporal windows, domain-specific covariates for drug exposure, drug era (including Anatomical Therapeutic Chemical (ATC) groupings), condition occurrence, condition era, concept sets and cohorts. Methods are based on the Observational Health Data Sciences and Informatics (OHDSI) framework described in Hripcsak et al. (2015) doi:10.1038/sdata.2015.35 and "The Book of OHDSI" OHDSI (2019, ISBN:978-1-7923-0589-8).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("OdysseusCharacterizationModule", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-odysseuscharacterizationmodule

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-OdysseusCharacterizationModule

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-OdysseusCharacterizationModule

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.1 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-10-18
ERROR11 OK, 2 ERROR2026-10-09
OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05

Show 6 earlier changesHide 6 earlier changes

NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK12 OK2026-04-28
ERROR9 OK, 1 ERROR2026-04-24
OK6 OK2026-04-23

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.0.1

READMENoVignettesYes · 2 · staticNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 23 (8 internal)includes a package overview page
Examples that run: 25%2 run in a plain check · 3 only when donttest examples are enabled (R CMD check --as-cran) · 3 never run
Exported functions with examples: 67%
Documented parameters: 84%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (2)

How these are measured

Downloads

2K

CRAN downloads in the past year

Rank #14,703 · ~6/day · ~169/mo

Releases R versions

Daily download trend is not available in this view yet.

26930 days

82690 days

2K1 year

Compare downloads with other packages →

Also on38 r2u2 autocran

How downloads are counted

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Installing OdysseusCharacterizationModule adds 43 packages (25 with compiled code, 26 MB of source tarballs). Heaviest: stringi 11 MB, Rcpp 1.8 MB, jsonlite 1.0 MB.

Depends (1)

R >= 4.1.0

Imports (5)

checkmate DatabaseConnector jsonlite SqlRenderstats

LinkingTo (0)

none

Suggests (7)

Andromeda Eunomia FeatureExtraction knitr rmarkdown testthat withr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Alexander Alexeyuk

Author, Maintainer since 0.0.1 (2026)

Releases (1)

R
R 4.6.0 released · 2026-04-24
0.0.1Latest
record
2026-04-22 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-04-22
Total releases: 1 / 1 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1.0
Download size: 99 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("OdysseusCharacterizationModule")

Format

Alexeyuk, A. (2026). OdysseusCharacterizationModule: Handy and Minimalistic Common Data Model Characterization (Version 0.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.OdysseusCharacterizationModule

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for OdysseusCharacterizationModule version 0.0.1 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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