R Observatory: Metrics for MultiPhen version 2.0.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

MultiPhen

2.0.4

A Package to Test for Multi-Trait Association

0packages depend

4.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Lachlan CoinFirst published 2011-07-0616 releasesCRAN page ↗

Performs genetic association tests between SNPs (one-at-a-time) and multiple phenotypes (separately or in joint model).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("MultiPhen", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-multiphen

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-MultiPhen

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-MultiPhen

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.1 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

5

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-26
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

WARNING2026-03-18
5 OK · 8 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 48 wordsVignettesNopkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 16%

Downloads

4.1K

CRAN downloads in the past year

Rank #7,644 · ~11/day · ~343/mo

Releases R versions

Daily download trend is not available in this view yet.

22330 days

1.1K90 days

4.1K1 year

Compare downloads with other packages →

Also on113 r2u25 autocran

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (3)

MASSabind epitools

Imports (2)

RColorBrewer meta

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (5)

Maintainer (1)

Lachlan Coin

Author, Maintainer

Authors (5)

Lachlan Coin

Author, Maintainer

Federico Calboli

Author

Clive Hoggart

Author · added in 0.2

Paul O'Reilly

Author

Yotsawat Pompyen

Author · added in 0.2

Package Timeline

16 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.0.4Latest
2026-03-17 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
2.0.3
2020-02-09 · diff ↗
unarchivedReturned to CRAN
2020-02-09
R
R 3.6.0 released · 2019-04-26
archivedRemoved from CRAN
2018-05-03
check problems were not corrected despite reminders
R
R 3.5.0 released · 2018-04-23
2.0.2
2017-05-16 · diff ↗
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03

Show 19 earlier events

2.0.1
2015-07-06 · diff ↗
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
2.0.0
2014-01-08 · diff ↗
R
R 3.0.0 released · 2013-04-03
1.0.0
2013-03-20 · diff ↗
0.9.1
2012-08-28 · diff ↗
0.9
2012-08-24 · diff ↗
0.8
2012-06-29 · diff ↗
0.7
2012-06-26 · diff ↗
0.6
2012-06-08 · diff ↗
0.5
2012-04-30 · diff ↗
R
R 2.15.0 released · 2012-03-30
0.4
2012-03-28 · diff ↗
0.3
2012-02-29 · diff ↗
R
R 2.14.0 released · 2011-10-31
0.2
2011-07-23 · diff ↗
0.1
2011-07-06
R
R 2.13.0 released · 2011-04-13

Package metadata

First published: 2011-07-06
Total releases: 16 / 15 yrs
License: GPL-2 OSI
Bundled data: 6.7 KB / 3 files
Download size: 66 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MultiPhen")

Format

Coin, L., Calboli, F., Hoggart, C., O'Reilly, P., & Pompyen, Y. (2026). MultiPhen: A Package to Test for Multi-Trait Association (Version 2.0.4) [Computer software]. https://doi.org/10.32614/CRAN.package.MultiPhen

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MultiPhen version 2.0.4 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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