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MonoPhy

Explore Monophyly of Taxonomic Groups in a Phylogeny

v1.3.2 · Oct 17, 2024 · GPL-3

Description

Requires rooted phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways. "MonoPhy: a simple R package to find and visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016) <doi:10.7717/peerj-cs.56>.

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CRAN Check Status

14 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies ape phytools phangorn RColorBrewer MonoPhy

Version History

new 1.3.2 Mar 10, 2026
updated 1.3.2 ← 1.3.1 diff Oct 16, 2024
updated 1.3.1 ← 1.3 diff May 4, 2024
updated 1.3 ← 1.2 diff Feb 16, 2021
updated 1.2 ← 1.1 diff Jul 25, 2016
updated 1.1 ← 1.0 diff Mar 10, 2016
new 1.0 Oct 18, 2015