R Observatory: Metrics for MixMAP version 1.3.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-12-05. Its history is shown below.

Reason: issues were not corrected despite reminders

Details below reflect version 1.3.4, its last release before removal.

MixMAP

1.3.4Package record

Implements the MixMAP Algorithm

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Gregory J. MatthewsCRAN page ↗

A collection of functions to implement the MixMAP algorithm, which performs gene level tests of association using data from a previous GWAS or data from a meta-analysis of several GWAS. Conceptually, genes are detected as significant if the collection of p-values within a gene are determined to be collectively smaller than would be observed by chance.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/MixMAP/MixMAP_1.3.4.tar.gz"
pkgFile <- "MixMAP_1.3.4.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.3.4) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.4

READMEYes · 102 wordsVignettesNoNEWSNoCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 7includes a package overview page
Examples that run: 100%7 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 86%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on28 r2u7 autocran

How downloads are counted

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (1)

R >= 2.15.1

Imports (5)

methodsgraphicsstatsutilslme4

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Gregory J. Matthews

Contributor

Maintainer since 1.0 (2012)

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-12-05
issues were not corrected despite reminders
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.3.4
record
2015-08-10 · diff ↗
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
1.3.1
record
2013-10-01 · diff ↗ ·
removed 1 export
MixMAP

added 2 exports
mixmapTest, mixmapPI
1.2
record
2013-10-01 · diff ↗
1.1
record
2013-07-01 · diff ↗ ·
removed 1 export
pattern:^[[:alpha:]]+

added 1 export
MixMAP
R
R 3.0.0 released · 2013-04-03

Show 2 earlier eventsHide 2 earlier events

1.0
record
2012-08-13
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-08-13
Total releases: 5 / 14 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.15.1
Bundled data: 304 KB / 1 file

Cite

Cite this package

Run in R for the authors' entry:

citation("MixMAP")

The package provides a citation file, so citation() returns the authors' own entry.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MixMAP version 1.3.4 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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