R Observatory: Metrics for MicroMoB version 0.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

MicroMoB

0.1.2

Discrete Time Simulation of Mosquito-Borne Pathogen Transmission

0packages depend

3.5Kdownloads / year

84.7%test coverage

13/13checks pass

Overview

About

Maintained by Sean L. WuFirst published 2022-02-015 releasesCRAN page ↗GitHub ↗

Provides a framework based on S3 dispatch for constructing models of mosquito-borne pathogen transmission which are constructed from submodels of various components (i.e. immature and adult mosquitoes, human populations). A consistent mathematical expression for the distribution of bites on hosts means that different models (stochastic, deterministic, etc.) can be coherently incorporated and updated over a discrete time step.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("MicroMoB", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("dd-harp/MicroMoB")

Development version from dd-harp/MicroMoB. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-micromob

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-MicroMoB

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-MicroMoB

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 10.5 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.92

84.7%

Coverage · measured lines

100%

Documentation · exports

2

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 438 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 96%
References docs: 0%

Downloads

3.5K

CRAN downloads in the past year

Rank #11,849 · ~10/day · ~290/mo

Releases R versions

Daily download trend is not available in this view yet.

21630 days

85090 days

3.5K1 year

Compare downloads with other packages →

Also on412 r2u23 autocran

Repository

GitHub ↗ dd-harp/micromob

2Stars

0Forks

4Open issues

0Open PRs

6Releases

299Commits

2Contributors

299 commits · Last activity 2024-05-31

Stars over time

2022-03-03 · 12026-07-07 · 2

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/dd-harp/micromob on 2026-08-23.

Continuous integration (1)

GitHub Actions

Lint, format, editor (1)

RStudio project

Coverage (1)

.covrignore

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (2)

abind jsonlite

LinkingTo (0)

none

Suggests (10)

knitr rmarkdown testthat ggplot2 data.table callr httr readr withr plumber

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Sean L. Wu

Author, Maintainer

Authors (2)

Sean L. Wu

Author, Maintainer

David L. Smith

Author

Contributors (1)

Sophie Libkind

Contributor

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.2Latest
2023-01-17 · current release · diff ↗
0.1.0
2022-07-01 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.0.12
2022-03-17 · diff ↗
0.0.11
2022-03-09 · diff ↗
0.0.9
2022-02-01
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-02-01
Total releases: 5 / 4 yrs
License: MIT + file LICENSE OSI
Download size: 4.6 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MicroMoB")

Format

Wu, S. L., Libkind, S., & Smith, D. L. (2023). MicroMoB: Discrete Time Simulation of Mosquito-Borne Pathogen Transmission (Version 0.1.2) [Computer software]. https://doi.org/10.32614/CRAN.package.MicroMoB

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MicroMoB version 0.1.2 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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