R Observatory: Metrics for MatchingPursuit version 1.3.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

MatchingPursuit

1.3.0Package record

Processing Time Series Data Using the Matching Pursuit Algorithm

0packages depend

2.5Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Artur GramackiCRAN page ↗GitHub ↗Issues ↗

Provides tools for analysing and decomposing time series data using the Matching Pursuit (MP) algorithm, a greedy signal decomposition technique that represents complex signals as a linear combination of simpler functions (called atoms) selected from a redundant dictionary. Support for the Orthogonal Matching Pursuit (OMP) variant of the classical MP algorithm is also provided. For more details see Mallat and Zhang (1993) doi:10.1109/78.258082, Pati et al. (1993) doi:10.1109/ACSSC.1993.342465, Elad (2010) doi:10.1007/978-1-4419-7011-4 and Różański (2024) doi:10.1145/3674832.

Changes in 1.3.0

Simplified the native MP/OMP core interfaces. mp_core() and omp_core() now accept numeric vector, matrix, or data frame dictionaries directly and no longer accept topk objects. Dictionary atoms are internally normalized to unit L2 norm before decomposition, making atom selection invariant to non-zero scaling of dictionary columns.
Updated the high-level Gabor-based MP/OMP workflow in mp_omp_execute(), which now internally calls read_gabor_dict() and topk_gabor_atoms(). The dictionary argument has changed: it now accepts either NULL or a path to an XML dictionary file, instead of a precomputed topk object. When dictionary = NULL, the XML dictionary is generated internally.
Added the full_atoms_in_signal parameter to mp_omp_execute(), which controls whether Gabor atoms must be fully contained within the signal boundaries. When set to FALSE, additional boundary-crossing atoms are included in the candidate dictionary, which can substantially improve decomposition quality near the beginning and end of the signal.

Show all changes in 1.3.0Hide the rest of the changes in 1.3.0

Renamed topk_atoms() function to topk_gabor_atoms().
Removed the mp_omp_pipeline() function because its functionality is now provided by mp_omp_execute().
Added omp_reference(), a simple educational and reference implementation of Orthogonal Matching Pursuit.
Added and improved S3 methods for package objects, including methods for printing, summarizing, and plotting.
Updated package documentation, examples, README, and vignette to reflect the current MP-R, OMP-R, and EMPI workflows.
Improved input validation, error handling, and overall code consistency.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("MatchingPursuit", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("artur-gramacki/MatchingPursuit")

Development version from artur-gramacki/MatchingPursuit. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-matchingpursuit

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-MatchingPursuit

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

2ERROR11OK

Check messages

ERRORre-building of vignette outputsr-oldrel-macos-x86_64, r-release-macos-x86_64

Error(s) in re-building vignettes:
--- re-building ‘MatchingPursuit.Rmd’ using rmarkdown

Quitting from MatchingPursuit.Rmd:110-112 [empi_locate]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
...[truncated]...
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MatchingPursuit.Rmd' failed with diagnostics:
Only Apple Silicon Macs (arm64) are supported. Detected architecture: x86_64
--- failed re-building ‘MatchingPursuit.Rmd’

SUMMARY: processing the following file failed:
  ‘MatchingPursuit.Rmd’

Error: Vignette re-building failed.
Execution halted

CRAN check page ↗

Slowest check: 4.1 min · r-oldrel-windows-x86_64

Status changes

ERROR11 OK, 2 ERROR2026-08-20
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08

Show 1 earlier changeHide 1 earlier change

OK5 OK2026-04-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.0

READMEYes · 1,080 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 1.3.0Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 32 (1 internal)includes a package overview page
Examples that run: 97%30 run in a plain check (5 of them under a condition) · 1 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 3%

Vignettes (1)

Introduction to `MatchingPursuit` package

How these are measured

Downloads

2.5K

CRAN downloads in the past year

Rank #11,119 · ~7/day · ~209/mo

Releases R versions

Daily download trend is not available in this view yet.

44930 days

93890 days

2.5K1 year

Compare downloads with other packages →

Also on67 r2u

How downloads are counted

Repository

artur-gramacki/matchingpursuit ↗Account: artur-gramacki

0Stars

0Forks

0Open issues

0Open PRs

3Releases

107Commits

1Commit identities

107 commits · Last activity 2026-10-14 · Default branch at 1.3.1, ahead of CRAN 1.3.0 (checked 2026-10-11)

Responsiveness

not measured

Releases over time

2026-08-20 · 22026-09-10 · 3

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/artur-gramacki/matchingpursuit on 2026-10-11.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Installing MatchingPursuit adds 52 packages (33 with compiled code, 60 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (1)

R >= 4.0.0

Imports (11)

edf signal RSQLite imager rastergraphicsgrDevicesutilsdigest EGM xml2

LinkingTo (0)

none

Suggests (4)

knitr rmarkdown latex2exp remotes

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Artur Gramacki

Author, Maintainer since 1.0.0 (2026)

Jarosław Gramacki

Contributor

Piotr T. Różański

Contributor

provided technical guidance on the operation of the EMPI software

Releases (5)

Pick two releases to compare their code metrics.

1.3.0Latest
record
2026-09-17 · current release · diff ↗ ·
removed 2 exports
mp_omp_pipeline, topk_atoms

added 2 exports
omp_reference, topk_gabor_atoms
1.2.0
record
2026-08-19 · diff ↗ ·
removed 10 exports
atom_params, filters_coeff, gabor_fun, gabor_proj_fft, omp_execute, read_dict, read_ecg_signals, read_empi_db_file, run_omp_pipeline, sig2bin

added 14 exports
as_sig, design_filters, gabor_atom, gabor_projection_fft, generate_xml_dict, mp_core, mp_omp_execute, mp_omp_pipeline, read_atom_params, read_empi_db, read_gabor_dict, read_wfdb_signals, resample_signal, signal_to_bin
1.1.0
record
2026-06-24 · diff ↗ ·
removed 14 exports
atom.params, clear.cache, eeg.montage, empi.check, empi.execute, empi.install, empi.locate, empi2tf, filters.coeff, gabor.fun, read.csv.signals, read.edf.params, read.edf.signals, read.empi.db.file

added 21 exports
atom_params, clear_cache, eeg_montage, empi_check, empi_execute, empi_install, empi_locate, filters_coeff, gabor_fun, gabor_proj_fft, omp_core, omp_execute, read_csv_signals, read_dict, read_ecg_signals, read_edf_params, read_edf_signals, read_empi_db_file, run_omp_pipeline, tf_map, topk_atoms
R
R 4.6.0 released · 2026-04-24
1.0.1
record
2026-04-14 · diff ↗
1.0.0
record
2026-04-09
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-04-09
Total releases: 5 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.0.0
Download size: 5.7 MB

Appears in task views

Time Series Analysis

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MatchingPursuit")

Format

Gramacki, A., Gramacki, J., & Różański, P. T. (2026). MatchingPursuit: Processing Time Series Data Using the Matching Pursuit Algorithm (Version 1.3.0) [Computer software]. https://doi.org/10.32614/CRAN.package.MatchingPursuit

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MatchingPursuit version 1.3.0 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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