R Observatory: Metrics for MSeasy version 5.3.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2019-06-02. Its history is shown below.

Reason: requires non-portable package. 'mzR' from BioC

Details below reflect version 5.3.3, its last release before removal.

MSeasy

5.3.3Package record

Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Yann GUITTONCRAN page ↗Website ↗

Package for the detection of molecules in complex mixtures of compounds. It creates an initial_DATA matrix from several GC-MS analyses by collecting and assembling the information from chromatograms and mass spectra (MS.DataCreation), It can read several format (ASCII, CDF, mzML, mzXML or mzData).It tests for the best unsupervised clustering method to group similar mass spectra into molecules (MS.test.clust).It runs the optimal unsupervised clustering method on the initial_DATA matrix, identifies the optimal number of clusters, produces different files for facilitating the quality control and identification of putative molecules, and returns fingerprinting or profiling matrices (MS.clust).It converts output files from MS.clust for NIST mass spectral library search and ARISTO webtool search

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/MSeasy/MSeasy_5.3.3.tar.gz"
pkgFile <- "MSeasy_5.3.3.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (5.3.3) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 5.3.3

READMENoVignettesNoNEWSNoCitation fileYes · cites a publicationWebsiteYes

Help pages: 15includes a package overview page
Examples that run: 57%8 run in a plain check · 6 never run
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 0%

How these are measured

Downloads

MSeasy Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

How downloads are counted

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (6)

amap clValidclusterfpc mzR xcms

Imports (0)

none

LinkingTo (0)

none

Suggests (1)

tcltk

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Elodie Courtois

Contributor

Yann Guitton

Contributor

Florence Nicole

Contributor

Maintainer since at least 5.3.3 (2013)

Releases (4)

Pick two releases to compare their code metrics.

R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2019-06-02
requires non-portable package 'mzR' from BioC
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
5.3.3
record
2013-03-18 · diff ↗
5.3.1
record
2012-05-12 · diff ↗
5.3
record
2012-04-20 · diff ↗ ·
added 1 export
pattern:.
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
5.2
record
2011-09-06
R
R 2.13.0 released · 2011-04-13

Package metadata

First published: 2011-09-06
Total releases: 4 / 15 yrs
License: GPL-2 OSI
Bundled data: 149 KB / 4 files

Cite

Cite this package

Run in R for the authors' entry:

citation("MSeasy")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1093/bioinformatics/bts427.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MSeasy version 5.3.3 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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