R Observatory: Metrics for MSeasy version 5.3.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2019-06-02. Its history is shown below.

Reason: requires non-portable package. 'mzR' from BioC

Details below reflect version 5.3.3, its last release before removal.

MSeasy

5.3.3

Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Yann GUITTON4 releasesCRAN page ↗

Package for the detection of molecules in complex mixtures of compounds. It creates an initial_DATA matrix from several GC-MS analyses by collecting and assembling the information from chromatograms and mass spectra (MS.DataCreation), It can read several format (ASCII, CDF, mzML, mzXML or mzData).It tests for the best unsupervised clustering method to group similar mass spectra into molecules (MS.test.clust).It runs the optimal unsupervised clustering method on the initial_DATA matrix, identifies the optimal number of clusters, produces different files for facilitating the quality control and identification of putative molecules, and returns fingerprinting or profiling matrices (MS.clust).It converts output files from MS.clust for NIST mass spectral library search and ARISTO webtool search

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/MSeasy/MSeasy_5.3.3.tar.gz"
pkgFile <- "MSeasy_5.3.3.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (5.3.3) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

6

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 93%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 0%

Downloads

MSeasy Releases R versions

Daily download trend is not available in this view yet.

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Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (6)

amap clValidclusterfpc mzR xcms

Imports (0)

none

LinkingTo (0)

none

Suggests (1)

tcltk

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Other (3)

Elodie Courtois

Contributor

Yann Guitton

Contributor

Florence Nicole

Contributor

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2019-06-02
requires non-portable package 'mzR' from BioC
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
5.3.3
2013-03-18 · diff ↗
5.3.1
2012-05-12 · diff ↗
5.3
2012-04-20 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
5.2
2011-09-06
R
R 2.13.0 released · 2011-04-13

Package metadata

Total releases: 4
License: GPL-2 OSI
Bundled data: 149 KB / 4 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MSeasy")

Format

Courtois, E., Guitton, Y., & Nicole, F. (n.d.). MSeasy: Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data (Version 5.3.3) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=MSeasy

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MSeasy version 5.3.3 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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