MSEtool

3.7.5

Management Strategy Evaluation Toolkit

5packages depend

10.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Adrian HordykFirst published 2018-08-1731 releasesCRAN page ↗GitHub ↗

Development, simulation testing, and implementation of management procedures for fisheries (see Carruthers & Hordyk (2018) doi:10.1111/2041-210X.13081).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("MSEtool", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Blue-Matter/MSEtool")

Development version from Blue-Matter/MSEtool. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-msetool

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-MSEtool

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-MSEtool

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 10.7 min · r-devel-linux-x86_64-fedora-gcc

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

None

Vignettes

Yes

README

Dependencies · direct

Check history

OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

10.3K

CRAN downloads in the past year

Rank #8,282 · ~28/day · ~858/mo

MSEtool By source Releases R versions

Daily download trend is not available in this view yet.

63530 days

1.4K90 days

10.3K1 year

Compare downloads with other packages →

Also on693 r2u25 autocran

Repository

GitHub ↗ blue-matter/msetool

Dependencies

Declared dependencies

31 external dependencies (excludes base and recommended)

Depends (2)

R >= 4.1.0snowfall

Imports (10)

abind cli dplyrmethodsgrDevicesggplot2parallelRcppstatsutils

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (25)

bootbroom covr crayon DT fmsb kableExtra knitr ggrepel gridExtraMASSmvtnorm openxlsx pak pbapply r4ss readxl reshape2 rfishbase rmarkdown shiny testthat tidyr TMB usethis

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

5direct

0indirect

DLMtool SAMtool openMSE salmonMSE Slick

Code & Tests

Code Composition

R 43,456 (78%)Rd 11,230 (20%)C++ 1,332 (2%)

Code characteristics

Object systems

S316S4 class12S4 generic2S4 method24

Cyclomatic complexity: 3.0 median / 203 max
Documented parameters: 99%

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

542 201 exported

Complexity

8.8 avg / 203 max

Call network

542 nodes / 806 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (4)

Maintainer (1)

Adrian Hordyk

Author, Maintainer

Authors (3)

Adrian Hordyk

Author, Maintainer

Tom Carruthers

Author

Quang Huynh

Author

Contributors (1)

Chris Grandin

Contributor

Release timeline

31 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
3.7.5Latest
2025-09-30 · current release · diff ↗
3.7.4
2025-06-04 · diff ↗
R
R 4.5.0 released · 2025-04-11
3.7.3
2024-11-22 · diff ↗
3.7.2
2024-09-23 · diff ↗
R
R 4.4.0 released · 2024-04-24
3.7.1
2024-02-06 · diff ↗
3.7.0
2023-07-20 · diff ↗
R
R 4.3.0 released · 2023-04-21
3.6.2
2023-03-28 · diff ↗
3.6.1
2023-01-05 · diff ↗
3.6.0
2022-10-19 · diff ↗
3.5.0
2022-06-07 · diff ↗
R
R 4.2.0 released · 2022-04-22
3.4.0
2022-01-05 · diff ↗

Show 24 earlier events

3.3.0
2021-11-16 · diff ↗
3.2.0
2021-08-13 · diff ↗
3.1.1
2021-07-08 · diff ↗
3.1.0
2021-07-03 · diff ↗
R
R 4.1.0 released · 2021-05-18
3.0.2
2021-03-10 · diff ↗
3.0.1
2021-02-02 · diff ↗
3.0.0
2021-01-09 · diff ↗
2.0.1
2020-09-29 · diff ↗
2.0.0
2020-08-06 · diff ↗
1.7.0
2020-06-24 · diff ↗
1.6.0
2020-05-05 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.5.0
2020-03-24 · diff ↗
1.4.3
2020-01-10 · diff ↗
1.4.1
2019-12-03 · diff ↗
1.4.0
2019-12-01 · diff ↗
1.3.0
2019-10-01 · diff ↗
1.2.1
2019-07-30 · diff ↗
1.2.0
2019-06-17 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.1.0
2018-10-17 · diff ↗
1.0.0
2018-08-17
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-08-17
Total releases: 31 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.1.0
Bundled data: 2.9 MB / 58 files
Download size: 3.5 MB
Installed size: not tracked yet
With dependencies: not tracked yet