R Observatory: Metrics for MHMM version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-09-04. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 1.0.0, its last release before removal.

MHMM

1.0.0

Finite Mixture of Hidden Markov Model

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Matthieu Marbac1 releasesCRAN page ↗

Estimation of the latent states and partition by maximum likelihood. Model can be used for analyzing accelerometer data. In such a case, the latent states corresponds to activity levels and the partition permits to consider heterogeneity within the population. Emission laws are zero-inflated gamma distributions. Their parameters depends on the latent states but not on the partition, to compare the time spent by activity levels between classes. Model description is available in Du Roy de Chaumaray, M. and Marbac, M. and Navarro, F. (2019) arXiv:1906.01547.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/MHMM/MHMM_1.0.0.tar.gz"
pkgFile <- "MHMM_1.0.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mhmm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-MHMM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

6

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 75%
Return-value docs: 100%
References docs: 38%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on307 r2u12 autocran

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.4

Imports (6)

Rcppmethodsparallelggplot2 reshape2 gridExtra

LinkingTo (3)

Rcpp RcppArmadillo BH

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Other (3)

Marie Du-Roy-De-Chaumary

Contributor

Matthieu Marbac

Contributor

Fabien Navarro

Contributor

Package Timeline

1 release. R releases are shown for context.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-09-04
issues were not corrected in time
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0.0
2020-03-20
R
R 3.6.0 released · 2019-04-26

Package metadata

Total releases: 1
License: GPL (>= 2) OSI
Minimum R: ≥ 3.4.4
Bundled data: 6.5 KB / 1 file
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MHMM")

Format

Du-Roy-De-Chaumary, M., Marbac, M., & Navarro, F. (n.d.). MHMM: Finite Mixture of Hidden Markov Model (Version 1.0.0) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=MHMM

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MHMM version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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