R Observatory: Metrics for MAMA version 2.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2017-03-26. Its history is shown below.

Reason: check problems were not corrected despite reminders

Details below reflect version 2.2.1, its last release before removal.

MAMA

2.2.1Package record

Meta-Analysis of MicroArray

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Ivana IhnatovaCRAN page ↗

Implementation of methods for microarray meta-analysis.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/MAMA/MAMA_2.2.1.tar.gz"
pkgFile <- "MAMA_2.2.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2.2.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.2.1

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 67
Examples that run: 91%43 run in a plain check · 3 never run · 1 hold no code
Exported functions with examples: 71%
Documented parameters: 99%
Return-value docs: 89%
Help pages citing references: 43%

How these are measured

Downloads

MAMA Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on42 c2d4u

How downloads are counted

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (9)

R >= 2.15.1methodsgenefilter metaMA xtable multtest gtoolsgridGeneMeta

Imports (5)

MergeMaid GeneMeta xtablemethodsmetaArray

LinkingTo (0)

none

Suggests (2)

gplots RankProd

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Ivana Ihnatova.

Contributor

Maintainer since 1.0.1 (2010)

Releases (4)

Pick two releases to compare their code metrics.

R
R 3.4.0 released · 2017-04-21
archivedRemoved from CRAN
2017-03-26
check problems were not corrected despite reminders
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
2.2.1
record
2013-01-28 · diff ↗ ·
removed 1 export
TSP
2.1.0
record
2012-09-16 · diff ↗ ·
removed 5 exports
dataGEM, dataSOGL, dataZ, MAP.HTMLanno, plotclinical

added 32 exports
colIntersect, commonGenes, computeAlpha, computeOrdering, flip, performSOGL, plot.SOGLresult, prelimScore, prepareData, preparePermutations, RandomScore, selectAlpha, selectGenes, selectClass, sigScore, posterior.mean, mergeExprs2, GEDM, clinical, datanames, zScores, zScorePermuted, zScoreFDR, multExpFDR, MAP.Matches, TSP, RankProduct, METRADISC, VennMapper, ES.GeneMeta and 2 more
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
1.0.2
record
2010-05-15 · diff ↗ ·
added 11 exports
plotpattern, T.select, plotES, plotQvsChi, MAPmatrix, rank.genes.adv, meta.test, mergedata, probs.to.matrix, join.DEG, join.results
1.0.1
record
2010-05-15
R
R 2.11.0 released · 2010-04-22

Package metadata

First published: 2010-05-15
Total releases: 4 / 16 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.15.1
Bundled data: 543 KB / 1 file

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MAMA")

Format

Ihnatova., I. (n.d.). MAMA: Meta-Analysis of MicroArray (Version 2.2.1) [Computer software]. Retrieved October 27, 2026, from https://CRAN.R-project.org/package=MAMA

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MAMA version 2.2.1 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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