MADPop
MHC Allele-Based Differencing Between Populations
Description
Tools for the analysis of population differences using the Major Histocompatibility Complex (MHC) genotypes of samples having a variable number of alleles (1-4) recorded for each individual. A hierarchical Dirichlet-Multinomial model on the genotype counts is used to pool small samples from multiple populations for pairwise tests of equality. Bayesian inference is implemented via the 'rstan' package. Bootstrapped and posterior p-values are provided for chi-squared and likelihood ratio tests of equal genotype probabilities.
Downloads
301
Last 30 days
13419th
729
Last 90 days
2.6K
Last year
Trend: +23.9% (30d vs prior 30d)
CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (5 non-OK)
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
installed package size
installed size is 38.1Mb
sub-directories of 1Mb or more:
libs 37.7Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
installed package size
installed size is 39.3Mb
sub-directories of 1Mb or more:
libs 38.9Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
Check History
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 38.1Mb
sub-directories of 1Mb or more:
libs 37.7Mb
installed package size
installed size is 39.3Mb
sub-directories of 1Mb or more:
libs 38.9Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.