R Observatory: Metrics for LoopRig version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

LoopRig

0.1.1

Integration and Analysis of Chromatin Loop Data

0packages depend

2.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Hassaan MaanFirst published 2019-12-201 releasesCRAN page ↗

Common coordinate-based workflows involving processed chromatin loop and genomic element data are considered and packaged into appropriate customizable functions. Includes methods for linking element sets via chromatin loops and creating consensus loop datasets.

Install

R (CRAN)Ubuntu (r2u)

install.packages("LoopRig", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-looprig

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 3.0 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.48

not tracked

Coverage

100%

Documentation · exports

4

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 129 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 88%
References docs: 0%

Downloads

2.3K

CRAN downloads in the past year

Rank #16,462 · ~6/day · ~193/mo

Releases R versions

Daily download trend is not available in this view yet.

17330 days

64790 days

2.3K1 year

Compare downloads with other packages →

Also on102 r2u

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (4)

GenomicRanges IRangesutilsS4Vectors

LinkingTo (0)

none

Suggests (4)

testthat knitr rmarkdown covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Hassaan Maan

Author, Maintainer

Authors (1)

Hassaan Maan

Author, Maintainer

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.1Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2019-12-20
Total releases: 1 / 7 yrs
License: GPL-3 | file LICENSE OSI
Minimum R: ≥ 3.4.0
Download size: 716 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("LoopRig")

Format

Hassaan Maan. (2019). LoopRig: Integration and Analysis of Chromatin Loop Data (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.LoopRig

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for LoopRig version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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