R Observatory: Metrics for LifemapR version 1.1.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

LifemapR

1.1.6Package record

Data Visualisation on 'Lifemap' Tree

0packages depend

3Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Aurélie SiberchicotCRAN page ↗GitHub ↗Website ↗Issues ↗

Allow to visualise data on the NCBI phylogenetic tree as presented in Lifemap https://lifemap.cnrs.fr/. It takes as input a dataframe with at least a "taxid" column containing NCBI format TaxIds and allows to draw multiple layers with different visualisation tools.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("LifemapR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Lifemap-ToL/LifemapR")

Development version from Lifemap-ToL/LifemapR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-lifemapr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-LifemapR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-LifemapR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.9 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1.6

READMEYes · 244 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsiteYes · pkgdown

Help pages: 27
Examples that run: 100%12 run in a plain check (4 of them under a condition)
Exported functions with examples: 67%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

Use of LifemapR

How these are measured

Downloads

3K

CRAN downloads in the past year

Rank #13,939 · ~8/day · ~249/mo

Releases R versions

Daily download trend is not available in this view yet.

28130 days

84790 days

3K1 year

Compare downloads with other packages →

Also on93 r2u

How downloads are counted

Repository

lifemap-tol/lifemapr ↗Organization: Lifemap-ToL

8Stars

2Forks

0Open issues

0Open PRs

4Releases

289Commits

7Commit identities

289 commits · Last activity 2025-08-27 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2024-09-20 · 72026-07-07 · 8

How these are measured

PracticesBeta

7 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/lifemap-tol/lifemapr on 2026-10-22.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (3)

pkgdown

GitHub Pages site last deployed 2025-08-27 · The repository has a site deploy workflow

Research and citation (1)

codemeta.json

Lint, format, editor (1)

lintr

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Installing LifemapR adds 80 packages (48 with compiled code, 78 MB of source tarballs). Heaviest: stringi 11 MB, sf 9.3 MB, bslib 5.6 MB.

Depends (1)

R >= 4.1.0

Imports (11)

leaflet shiny jsonlite dplyr tidyr leaflet.minicharts htmltools rlang RCurl fastmatch arrow

LinkingTo (0)

none

Suggests (1)

knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Aurélie Siberchicot

Contributor, Maintainer since 1.0.4 (2023)

Julien Barnier

Author · added in 1.1.5

Cassandra Bompard

Author

Damien M. de Vienne

Author

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
unarchivedReturned to CRAN
2025-08-27
1.1.6Latest
record
2025-08-27 · current release · diff ↗
archivedRemoved from CRAN
2025-08-23
repeated policy violation On Internet access
R
R 4.5.0 released · 2025-04-11
1.1.5
record
2025-03-06 · diff ↗
unarchivedReturned to CRAN
2024-07-31
1.1.4
record
2024-07-31 · diff ↗
archivedRemoved from CRAN
2024-07-21
repeated policy violation On Internet access, even on re-submission after a specific warning
1.1.2
record
2024-07-19 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.1.1
record
2024-03-20 · diff ↗
1.0.4
record
2023-08-24
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-08-24
Total releases: 6 / 3 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Bundled data: 334 KB / 5 files
Download size: 4.1 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("LifemapR")

Format

Siberchicot, A., Barnier, J., Bompard, C., & de Vienne, D. M. (2025). LifemapR: Data Visualisation on 'Lifemap' Tree (Version 1.1.6) [Computer software]. https://doi.org/10.32614/CRAN.package.LifemapR

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for LifemapR version 1.1.6 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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