LOCOM2

A Logistic Regression Model for Testing Microbial Differential Abundance

v1.0 · May 4, 2026 · GPL (>= 2)

Description

Testing differential abundance at individual taxa and in a whole microbial community. The tests are based on the log-ratio of relative abundances. The tests accommodate continuous, discrete (binary, categorical), and multivariate traits, and allow adjustment of confounders. For more details see He (2026) <doi:10.64898/2026.04.07.716976>.

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13 OK

Show all 13 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	71.6s
r-devel-linux-x86_64-debian-gcc	OK	54.8s
r-devel-linux-x86_64-fedora-clang	OK	108.4s
r-devel-linux-x86_64-fedora-gcc	OK	120.1s
r-devel-windows-x86_64	OK	122s
r-oldrel-macos-arm64	OK	17s
r-oldrel-macos-x86_64	OK	62s
r-oldrel-windows-x86_64	OK	139s
r-patched-linux-x86_64	OK	67.4s
r-release-linux-x86_64	OK
r-release-macos-arm64	OK	19s
r-release-macos-x86_64	OK	63s
r-release-windows-x86_64	OK	118s

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026

ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026

ERROR r-devel-linux-x86_64-debian-gcc

package dependencies

Package required but not available: ‘car’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

OK 7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 5, 2026

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Version History

1 tracked

new 1.0 May 4, 2026