R Observatory: Metrics for LMGene version 2.8.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2011-04-26. Its history is shown below.

Reason: This package is now available from Bioconductor only, see <https://www.bioconductor.org/packages/release/bioc/html/LMGene.html>

Details below reflect version 2.8.0, its last release before removal.

LMGene

2.8.0Package record

LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Blythe Durbin-JohnsonCRAN page ↗Website ↗

LMGene package for analysis of microarray data using a linear model and glog data transformation

Install

BioconductorR (source archive)

BiocManager::install("LMGene")

Installs the current Bioconductor release. Requires the BiocManager package.

url <- "https://cran.r-project.org/src/contrib/Archive/LMGene/LMGene_2.8.0.tar.gz"
pkgFile <- "LMGene_2.8.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2.8.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.8.0

READMENoVignettesNoNEWSNoCitation fileNoWebsiteYes

Help pages: 17
Examples that run: 100%17 run in a plain check
Exported functions with examples: 100%
Documented parameters: 98%
Return-value docs: 100%
Help pages citing references: 65%

How these are measured

Downloads

LMGene Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on1.1K bioconda

How downloads are counted

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (5)

R >= 2.10.0Biobase multtestsurvivalaffy

Imports (0)

none

LinkingTo (0)

none

Suggests (1)

affydata

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (5)

David Rocke

Contributor

Geun Cheol Lee

Contributor · added in 1.9.0

John Tillinghast

Contributor · added in 2.2.0

Blythe Durbin-Johnson

Contributor · added in 2.2.0

Shiquan Wu

Contributor · added in 2.2.0

Maintainer since 2.2.0 (2010), previously John Tillinghast (1.14.0 to 1.16.0) and David Rocke (1.9.0 to 1.9.1)

Listed in earlier versions (2)

Geun Cheol Lee.

no longer listed · 0.5.0 to 1.5

John Tillinghast.

no longer listed · 1.9.0 to 1.16.0

Releases (10)

Pick two releases to compare their code metrics.

2.8.0archived
2011-04-26 · diff ↗
This package is now available from Bioconductor only, see <https://www.bioconductor.org/packages/release/bioc/html/LMGene.html>
R
R 2.11.0 released · 2010-04-22
2.8.0
record
2010-01-15 · diff ↗
2.6.0
record
2010-01-15 · diff ↗
2.4.0
record
2010-01-15 · diff ↗
2.2.0
record
2010-01-15 · diff ↗ ·
added 13 exports
genediff, glog, LMGene, lnorm, lnormeS, neweS, norm, psmeans, plotMeanSD, rowaov, tranest, tranestAffyProbeLevel, transeS
R
R 2.10.0 released · 2009-10-26
1.16.0
record
2009-07-22 · diff ↗
R
R 2.9.0 released · 2009-04-17
R
R 2.8.0 released · 2008-10-20
R
R 2.7.0 released · 2008-04-22
R
R 2.6.0 released · 2007-10-03
R
R 2.5.0 released · 2007-04-24
R
R 2.4.0 released · 2006-10-03
R
R 2.3.0 released · 2006-04-24
R
R 2.2.0 released · 2005-10-06

Show 7 earlier eventsHide 7 earlier events

1.14.0
record
2005-07-06 · diff ↗
1.9.1
record
2005-07-06 · diff ↗
1.9.0
record
2005-07-06 · diff ↗
1.5
record
2005-07-06 · diff ↗
R
R 2.1.0 released · 2005-04-18
0.5.0
record
2005-04-01
R
R 2.0.0 released · 2004-10-04

Package metadata

First published: 2005-04-01
Total releases: 10 / 21 yrs
License: LGPL
Minimum R: ≥ 2.10.0
Bundled data: 78 KB / 4 files

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("LMGene")

Format

Rocke, D., Lee, G. C., Tillinghast, J., Durbin-Johnson, B., & Wu, S. (n.d.). LMGene: LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays (Version 2.8.0) [Computer software]. Retrieved October 27, 2026, from https://CRAN.R-project.org/package=LMGene

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for LMGene version 2.8.0 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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