R Observatory: Metrics for LABTNSCPSS version 1.0.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

CRAN requires the check problems on this package to be fixed before 2026-08-29 or it will be archived.

LABTNSCPSS

1.0.2

Calculation of Comorbidity and Frailty Scores

0packages depend

1.5Kdownloads / year

–test coverage

10/13checks pass

Overview

About

Maintained by Azadeh BayaniFirst published 2026-02-202 releasesCRAN page ↗GitHub ↗

Computes comorbidity indices and combined frailty scores for multiple ICD coding systems, including ICD-10-CA, ICD-10-CM, and ICD-11. The package provides tools to preprocess episode data, map diagnosis codes to chronic categories, propagate conditions across episodes, and generate comorbidity and frailty measures. The methods implemented are original to this package and were developed by the authors for research applications; a manuscript describing the methodology is currently in preparation.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("LABTNSCPSS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("bayaniazadeh/LabTNSCPSSPackage")

Development version from bayaniazadeh/LabTNSCPSSPackage. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-labtnscpss

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-LABTNSCPSS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-LABTNSCPSS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1ERROR2WARNING10OK

Failing flavors

WARNING r-devel-linux-x86_64-fedora-clang
WARNING r-devel-linux-x86_64-fedora-gcc
ERROR r-oldrel-windows-x86_64

Slowest check: 29.4 min · r-release-linux-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

86%

Documentation · exports

11

Dependencies · direct

Check history

ERROR2026-04-26
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-28
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 78 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 4%

Downloads

1.5K

CRAN downloads in the past year

Rank #17,175 · ~4/day · ~124/mo

Releases R versions

Daily download trend is not available in this view yet.

17430 days

62390 days

1.5K1 year

Compare downloads with other packages →

Also on37 r2u19 autocran

Repository

GitHub ↗ bayaniazadeh/labtnscpsspackage

0Stars

0Forks

1Open issues

0Open PRs

0Releases

Last activity 2026-02-28

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/bayaniazadeh/labtnscpsspackage on 2026-08-16.

Reproducibility and dev environment (1)

data-raw/

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.3.0

Imports (11)

dplyr magrittr tibble checkmate tidyselect data.table stringi lubridate purrr tidyr glue

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Azadeh Bayani

Author, Maintainer

Authors (1)

Azadeh Bayani

Author, Maintainer

Contributors (2)

Michèle Bally

Contributor

Jean Noel Nikiema

Contributor

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.2Latest
2026-03-26 · current release · diff ↗
1.0
2026-03-10
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-02-20
Total releases: 2 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.3.0
Bundled data: 2.4 MB / 19 files
Download size: 2.3 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("LABTNSCPSS")

Format

Bayani, A., Bally, M., & Nikiema, J. N. (2026). LABTNSCPSS: Calculation of Comorbidity and Frailty Scores (Version 1.0.2) [Computer software]. https://doi.org/10.32614/CRAN.package.LABTNSCPSS

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for LABTNSCPSS version 1.0.2 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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