R Observatory: Metrics for JUMP version 1.0.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

JUMP

1.0.2

Replicability Analysis of High-Throughput Experiments

0packages depend

6.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Yan LiFirst published 2023-05-242 releasesCRAN page ↗

Implementing a computationally scalable false discovery rate control procedure for replicability analysis based on maximum of p-values. Please cite the manuscript corresponding to this package [Lyu, P. et al., (2023), doi:10.1093/bioinformatics/btad366].

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("JUMP", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-jump

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-JUMP

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-JUMP

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.7 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

3

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 0%

Downloads

6.2K

CRAN downloads in the past year

Rank #7,620 · ~17/day · ~520/mo

Releases R versions

Daily download trend is not available in this view yet.

13330 days

1.2K90 days

6.2K1 year

Compare downloads with other packages →

Also on370 r2u9 autocran

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (4)

R >= 4.1.2Rcppsplinesstats

Imports (0)

none

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Yan Li

Author, Maintainer, Copyright holder

Authors (4)

Yan Li

Author, Maintainer, Copyright holder

Hongyuan Cao

Author, Contributor

Pengfei Lyu

Author, Contributor

Xiaoquan Wen

Author

Contributors (2)

Hongyuan Cao

Author, Contributor

Pengfei Lyu

Author, Contributor

Copyright holders (1)

Yan Li

Author, Maintainer, Copyright holder

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.2Latest
2025-05-30 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.1
2023-05-24
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-05-24
Total releases: 2 / 3 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.1.2
Download size: 3.7 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("JUMP")

Format

Yan Li, Hongyuan Cao, Pengfei Lyu, & Xiaoquan Wen. (2025). JUMP: Replicability Analysis of High-Throughput Experiments (Version 1.0.2) [Computer software]. https://doi.org/10.32614/CRAN.package.JUMP

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for JUMP version 1.0.2 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →