R Observatory: Metrics for JMbayes version 0.9-0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

JMbayes

0.9-0Package record

Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach

0packages depend

7.1Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Dimitris RizopoulosCRAN page ↗GitHub ↗

Shared parameter models for the joint modeling of longitudinal and time-to-event data using MCMC; Dimitris Rizopoulos (2016) doi:10.18637/jss.v072.i07.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("JMbayes", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("drizopoulos/JMbayes")

Development version from drizopoulos/JMbayes. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-jmbayes

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-JMbayes

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-JMbayes

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 7.0 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK12 OK2026-04-25

Show 3 earlier changesHide 3 earlier changes

NOTE12 OK, 2 NOTE2026-04-22
ERROR11 OK, 2 NOTE, 1 ERROR2026-04-18
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.9-0

READMEYes · 645 wordsVignettesNoNEWSYes · 33% structuredCitation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Cites a JSS article

Help pages: 30includes a package overview page
Examples that run: 0%23 never run
Exported functions with examples: 92%
Documented parameters: 87%
Return-value docs: 92%
Help pages citing references: 57%

How these are measured

Downloads

7.1K

CRAN downloads in the past year

Rank #5,351 · ~20/day · ~594/mo

Releases R versions

Daily download trend is not available in this view yet.

56630 days

1.6K90 days

7.1K1 year

Compare downloads with other packages →

Also on385 r2u5 autocran159 c2d4u

How downloads are counted

Repository

drizopoulos/jmbayes ↗Account: drizopoulos

58Stars

24Forks

2Open issues

1Open PRs

1Releases

300Commits

6Commit identities

joint-modelslongitudinal-responsessurvival-analysisprediction-model

300 commits · Last activity 2021-01-28 · The default branch showed an older version (0.8-86) than CRAN on 2026-10-25

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 252
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-01-30 · 582026-07-07 · 58

How these are measured

PracticesBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/drizopoulos/jmbayes on 2026-10-25.

Continuous integration (1)

Travis CI (config file)

Lint, format, editor (1)

RStudio project

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Installing JMbayes adds 91 packages (44 with compiled code, 92 MB of source tarballs). Heaviest: BH 14 MB, stringi 11 MB, ggplot2 6.0 MB.

Depends (4)

nlmesurvivaldoParallel rstan

Imports (8)

MASSforeach Rcpp jagsUI xtable shinysplinesHmisc

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Dimitris Rizopoulos

Author, Maintainer since 0.1-1 (2012)

Releases (26)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.9-0Latest
record
2025-09-29 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.8-85
record
2020-01-09 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.8-83
record
2019-03-25 · diff ↗
0.8-82
record
2019-03-20 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.8-71
record
2018-04-17 · diff ↗
0.8-70
record
2017-10-30 · diff ↗
0.8-69
record
2017-10-18 · diff ↗ ·
added 2 exports
predict_eventTime, find_thresholds

Show 25 earlier eventsHide 25 earlier events

0.8-68
record
2017-10-02 · diff ↗
0.8-67
record
2017-09-25 · diff ↗
0.8-65
record
2017-09-18 · diff ↗ ·
added 4 exports
extract_lmeComponents, mvglmer, mvJointModelBayes, tve
R
R 3.4.0 released · 2017-04-21
0.8-0
record
2016-08-25 · diff ↗ ·
added 1 export
IndvPred_lme
R
R 3.3.0 released · 2016-05-03
0.7-9
record
2016-03-25 · diff ↗
0.7-8
record
2015-11-09 · diff ↗
0.7-2
record
2015-05-04 · diff ↗
R
R 3.2.0 released · 2015-04-16
0.7-0
record
2015-03-13 · diff ↗ ·
added 4 exports
cvDCL, dynInfo, rocJM, runDynPred
0.6-1
record
2014-06-11 · diff ↗
0.6-0
record
2014-05-01 · diff ↗
R
R 3.1.0 released · 2014-04-10
0.5-3
record
2014-03-10 · diff ↗
0.5-2
record
2014-02-12 · diff ↗
0.5-1
record
2014-02-05 · diff ↗
0.5-0
record
2014-01-09 · diff ↗ ·
added 5 exports
anova.JMbayes, dgt, pgt, rgt, qgt
0.4-1
record
2013-06-06 · diff ↗ ·
added 1 export
xtable.JMbayes
0.4-0
record
2013-05-15 · diff ↗ ·
added 3 exports
aucJM, dynCJM, prederrJM
R
R 3.0.0 released · 2013-04-03
0.3-0
record
2012-11-29 · diff ↗ ·
added 1 export
marglogLik
0.2-0
record
2012-10-02 · diff ↗
0.1-1
record
2012-09-17
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-09-17
Total releases: 26 / 14 yrs
License: GPL (>= 2) OSI
Bundled data: 125 KB / 6 files
Download size: 293 KB

Appears in task views

Survival Analysis

Cite

Cite this package

Run in R for the authors' entry:

citation("JMbayes")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.18637/jss.v072.i07.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for JMbayes version 0.9-0 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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