R Observatory: Metrics for JAGUAR version 3.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2019-12-01. Its history is shown below.

Reason: installation warnings were not addressed despite reminders

Details below reflect version 3.0.1, its last release before removal.

JAGUAR

3.0.1

Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL)

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Chaitanya Acharya5 releasesCRAN page ↗

Implements a novel score test that measures 1) the overall shift in the gene expression due to genotype (additive genetic effect), and 2) group-specific changes in gene expression due to genotype (interaction effect) in a mixed-effects model framework.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/JAGUAR/JAGUAR_3.0.1.tar.gz"
pkgFile <- "JAGUAR_3.0.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (3.0.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

4

Dependencies · direct

Documentation

READMEYes · 124 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 50%

Downloads

JAGUAR Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (5)

R >= 3.0.0Rcpp plyr lme4 reshape2

Imports (0)

none

LinkingTo (3)

RcppArmadillo Rcpp RcppProgress

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Other (2)

Chaitanya R. Acharya

Contributor

Andrew S. Allen

Contributor

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2019-12-01
installation warnings were not addressed despite reminders
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
3.0.1
2016-07-27 · diff ↗
R
R 3.3.0 released · 2016-05-03
3.0.0
2015-09-24 · diff ↗
R
R 3.2.0 released · 2015-04-16
2.0
2015-03-01 · diff ↗
1.1
2014-08-28 · diff ↗
1.0
2014-08-28
R
R 3.1.0 released · 2014-04-10

Package metadata

Total releases: 5
License: GPL-2 OSI
Minimum R: ≥ 3.0.0
Bundled data: 429 KB / 1 file
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("JAGUAR")

Format

Acharya, C. R., & Allen, A. S. (n.d.). JAGUAR: Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL) (Version 3.0.1) [Computer software]. Retrieved August 14, 2026, from https://CRAN.R-project.org/package=JAGUAR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for JAGUAR version 3.0.1 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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