R Observatory: Metrics for IntClust version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2021-04-03. Its history is shown below.

Reason: depends on archived package 'heatmap.plus'

Details below reflect version 0.1.0, its last release before removal.

IntClust

0.1.0

Integration of Multiple Data Sets with Clustering Techniques

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Marijke Van Moerbeke2 releasesCRAN page ↗

Several integrative data methods in which information of objects from different data sources can be combined are included in the IntClust package. As a single data source is limited in its point of view, this provides more insight and the opportunity to investigate how the variables are interconnected. Clustering techniques are to be applied to the combined information. For now, only agglomerative hierarchical clustering is implemented. Further, differential gene expression and pathway analysis can be conducted on the clusters. Plotting functions are available to visualize and compare results of the different methods.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/IntClust/IntClust_0.1.0.tar.gz"
pkgFile <- "IntClust_0.1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

25

Dependencies · direct

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 54%
Documented parameters: 91%
Return-value docs: 100%
References docs: 23%

Downloads

IntClust Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Dependencies

Declared dependencies

24 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (25)

ade4 a4Core Biobaseclusterplotrix plyr gplots gridExtra limma gtools e1071 plsstatsutilsgraphicsFactoMineR analogue lsa SNFtoolgrDevicesggplot2 circlize Rdpack data.table igraph

LinkingTo (0)

none

Suggests (4)

MLP biomaRt org.Hs.eg.db a4Base

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Other (1)

Marijke Van Moerbeke

Contributor

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2021-04-03
depends on archived package 'heatmap.plus'
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.1.0
2018-07-30 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
0.0.2
2016-03-31
R
R 3.2.0 released · 2015-04-16

Package metadata

Total releases: 2
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 1,022 KB / 6 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("IntClust")

Format

Moerbeke, M. V. (n.d.). IntClust: Integration of Multiple Data Sets with Clustering Techniques (Version 0.1.0) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=IntClust

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for IntClust version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →