INTRIGUE
Quantify and Control Reproducibility in High-Throughput Experiments
Description
Estimate the proportions of the null and the reproducibility and non-reproducibility of the signal group for the input data set. The Bayes factor calculation and EM (Expectation Maximization) algorithm procedures are also included.
Downloads
239
Last 30 days
20938th
587
Last 90 days
2.2K
Last year
Trend: +64.8% (30d vs prior 30d)
0
Last 30 days
23
Last 90 days
93
Last year
Trend: -100% (30d vs prior 30d)
1
Last 7 days
5
Last 30 days
0
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
dependencies in R code
Namespace in Imports field not imported from: ‘dplyr’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘dplyr’ All declared Imports should be used.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
dependencies in R code
Namespace in Imports field not imported from: ‘dplyr’ All declared Imports should be used.
dependencies in R code
Namespace in Imports field not imported from: ‘dplyr’ All declared Imports should be used.
Code & tests
Open call graph →Line coverage
–
Expression
–
Tests / Examples
–
Functions
8 2 exported
Complexity
6.5 avg / 24 max
Call network
8 nodes / 7 edges
Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.
Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
837
Files
23
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
6
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
1
First release
2020-11-05
Latest release
2020-11-05
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.
Dependency Network
Version History
1 trackedR Observatory began tracking this package on Mar 10, 2026; it first appeared on CRAN Nov 5, 2020. Releases before tracking aren’t shown.