R Observatory: Metrics for IDSpatialStats version 0.4.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

IDSpatialStats

0.4.0

Estimate Global Clustering in Infectious Disease

0packages depend

2.4Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Justin LesslerFirst published 2016-05-098 releasesCRAN page ↗

Implements various novel and standard clustering statistics and other analyses useful for understanding the spread of infectious disease.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("IDSpatialStats", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-idspatialstats

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-IDSpatialStats

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-IDSpatialStats

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.1 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

6

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 254 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 6%
Documented parameters: 92%
Return-value docs: 100%
References docs: 28%

Downloads

2.4K

CRAN downloads in the past year

Rank #16,389 · ~7/day · ~199/mo

Releases R versions

Daily download trend is not available in this view yet.

18330 days

65590 days

2.4K1 year

Compare downloads with other packages →

Also on396 r2u13 autocran

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (4)

R >= 2.10doParallel foreachparallel

Imports (3)

igraph spatstat.explore spatstat.geom

LinkingTo (0)

none

Suggests (2)

knitr testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Justin Lessler

Author, Maintainer

Authors (3)

Justin Lessler

Author, Maintainer

John Giles

Author, Contributor · added in 0.3.4

Henrik Salje

Author, Contributor

Contributors (3)

John Giles

Author, Contributor · added in 0.3.4

Henrik Salje

Author, Contributor

Timothy Willard

Contributor · added in 0.4.0

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.4.0Latest
2024-07-28 · current release · diff ↗
unarchivedReturned to CRAN
2024-07-28
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-12-12
requires archived package 'spatstat.core'
R
R 4.2.0 released · 2022-04-22
0.3.12
2021-08-09 · diff ↗
unarchivedReturned to CRAN
2021-08-09
R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2021-03-28
issues were not corrected in time
R
R 4.0.0 released · 2020-04-24
0.3.10
2019-11-15 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.3.5
2018-06-12 · diff ↗

Show 7 earlier events

0.3.4
2018-06-05 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
0.2.2
2016-09-20 · diff ↗
0.2.1
2016-05-11 · diff ↗
0.2
2016-05-09
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-05-09
Total releases: 8 / 10 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Bundled data: 38 KB / 3 files
Download size: 89 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("IDSpatialStats")

Format

Lessler, J., Giles, J., Salje, H., & Willard, T. (2024). IDSpatialStats: Estimate Global Clustering in Infectious Disease (Version 0.4.0) [Computer software]. https://doi.org/10.32614/CRAN.package.IDSpatialStats

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for IDSpatialStats version 0.4.0 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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