R Observatory: Metrics for IBRtools version 0.1.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

IBRtools

0.1.3

Integrating Biomarker-Based Assessments and Radarchart Creation

0packages depend

2.8Kdownloads / year

100.0%test coverage

13/13checks pass

Overview

About

Maintained by Anna Carolina ResendeFirst published 2022-12-222 releasesCRAN page ↗

Several functions to calculate two important indexes (IBR (Integrated Biomarker Response) and IBRv2 (Integrated Biological Response version 2)), it also calculates the standardized values for enzyme activity for each index, and it has a graphing function to perform radarplots that make great data visualization for this type of data. Beliaeff, B., & Burgeot, T. (2002). https://pubmed.ncbi.nlm.nih.gov/12069320/. Sanchez, W., Burgeot, T., & Porcher, J.-M. (2013).doi:10.1007/s11356-012-1359-1. Devin, S., Burgeot, T., Giambérini, L., Minguez, L., & Pain-Devin, S. (2014). doi:10.1007/s11356-013-2169-9. Minato N. (2022). https://minato.sip21c.org/msb/.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("IBRtools", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ibrtools

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-IBRtools

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-IBRtools

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.4 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.08

100.0%

Coverage · measured lines

100%

Documentation · exports

8

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 184 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 10%

Downloads

2.8K

CRAN downloads in the past year

Rank #15,521 · ~8/day · ~236/mo

Releases R versions

Daily download trend is not available in this view yet.

16730 days

67390 days

2.8K1 year

Compare downloads with other packages →

Also on99 r2u11 autocran

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (4)

R >= 3.5.0dplyr tibble data.table

Imports (5)

gtools tidyr fmsb binhf (>= 1.0.3)tidyselect

LinkingTo (0)

none

Suggests (2)

covr testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Anna Carolina Resende

Author, Maintainer

Authors (2)

Anna Carolina Resende

Author, Maintainer

Diego Mauro Carneiro Pereira

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.1.3Latest
2023-08-14 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
0.1.2
2022-12-22
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-12-22
Total releases: 2 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 3.7 KB / 3 files
Download size: 23 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("IBRtools")

Format

Resende, A. C., & Mauro Carneiro Pereira, D. (2023). IBRtools: Integrating Biomarker-Based Assessments and Radarchart Creation (Version 0.1.3) [Computer software]. https://doi.org/10.32614/CRAN.package.IBRtools

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for IBRtools version 0.1.3 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →