R Observatory: Metrics for HospitalNetwork version 0.9.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

HospitalNetwork

0.9.4

Building Networks of Hospitals Through Patients Transfers

1packages depend

2.9Kdownloads / year

81.2%test coverage

13/13checks pass

Overview

About

Maintained by Pascal CrépeyFirst published 2023-02-272 releasesCRAN page ↗GitHub ↗

Set of tools to help interested researchers to build hospital networks from data on hospitalized patients transferred between hospitals. Methods provided have been used in Donker T, Wallinga J, Grundmann H. (2010) doi:10.1371/journal.pcbi.1000715, and Nekkab N, Crépey P, Astagneau P, Opatowski L, Temime L. (2020) doi:10.1038/s41598-020-71212-6.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("HospitalNetwork", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("PascalCrepey/HospitalNetwork")

Development version from PascalCrepey/HospitalNetwork. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hospitalnetwork

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-HospitalNetwork

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-HospitalNetwork

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.2 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 1.06

81.2%

Coverage · measured lines

100%

Documentation · exports

7

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 802 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 92%
Return-value docs: 92%
References docs: 0%

Downloads

2.9K

CRAN downloads in the past year

Rank #14,536 · ~8/day · ~241/mo

Releases R versions

Daily download trend is not available in this view yet.

17630 days

70990 days

2.9K1 year

Compare downloads with other packages →

Also on118 r2u20 autocran

Repository

GitHub ↗ pascalcrepey/hospitalnetwork

7Stars

7Forks

5Open issues

0Open PRs

5Releases

184Commits

5Contributors

hospital-networkspatients-transferspatient-database

License GPL-3.0 · 184 commits · Last activity 2026-01-22

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/pascalcrepey/hospitalnetwork on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Coverage (1)

.covrignore

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

21 external dependencies (excludes base and recommended)

Depends (1)

data.table

Imports (6)

checkmate igraph lubridate R6 ggplot2 ggraph

LinkingTo (0)

none

Suggests (14)

knitr rmarkdown testthat shiny shinyWidgets shinydashboard DT shinyalert shinyjs vdiffr pander glue golem htmltools

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

blockstrap

Code & Tests

People & History

People (4)

Maintainer (1)

Pascal Crépey

Author, Maintainer, Copyright holder

Authors (4)

Pascal Crépey

Author, Maintainer, Copyright holder

Tjibbe Donker

Author

Michael Lydeamore

Author

Clément Massonnaud

Author

Copyright holders (1)

Pascal Crépey

Author, Maintainer, Copyright holder

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.9.4Latest
2024-12-22 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.9.3
2023-02-27
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2023-02-27
Total releases: 2 / 3 yrs
License: GPL-3 OSI
Download size: 623 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Network Analysis

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("HospitalNetwork")

Format

Crépey, P., Donker, T., Lydeamore, M., & Massonnaud, C. (2024). HospitalNetwork: Building Networks of Hospitals Through Patients Transfers (Version 0.9.4) [Computer software]. https://doi.org/10.32614/CRAN.package.HospitalNetwork

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for HospitalNetwork version 0.9.4 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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