R Observatory: Metrics for HDSpatialScan version 1.0.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

HDSpatialScan

1.0.5Package record

Multivariate and Functional Spatial Scan Statistics

0packages depend

3.2Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Camille FREVENTCRAN page ↗

Allows to detect spatial clusters of abnormal values on multivariate or functional data (Frévent et al. (2022) doi:10.32614/RJ-2022-045). See also: Frévent et al. (2023) doi:10.1093/jrsssc/qlad017, Smida et al. (2022) doi:10.1016/j.csda.2021.107378, Frévent et al. (2021) doi:10.1016/j.spasta.2021.100550. Cucala et al. (2019) doi:10.1016/j.spasta.2018.10.002, Cucala et al. (2017) doi:10.1016/j.spasta.2017.06.001, Jung and Cho (2015) doi:10.1186/s12942-015-0024-6, Kulldorff et al. (2009) doi:10.1186/1476-072X-8-58.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("HDSpatialScan", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hdspatialscan

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-HDSpatialScan

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-HDSpatialScan

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 8.8 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-04-22
ERROR13 OK, 1 ERROR2026-04-18
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.5

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Description cites an R Journal article

Help pages: 59includes a package overview page
Examples that run: 0%14 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 25%

How these are measured

Downloads

3.2K

CRAN downloads in the past year

Rank #13,279 · ~9/day · ~269/mo

Releases R versions

Daily download trend is not available in this view yet.

30830 days

86590 days

3.2K1 year

Compare downloads with other packages →

Also on357 r2u6 autocran

How downloads are counted

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Installing HDSpatialScan adds 88 packages (51 with compiled code, 85 MB of source tarballs). Heaviest: stringi 11 MB, sf 9.3 MB, ggplot2 6.0 MB.

Depends (1)

R >= 3.5.0

Imports (18)

Rcppparallelpbapply purrr matrixStats SpatialNP sp sf DT TeachingDemos plotrix fmsb swfscMisc rastergraphicsstatsgrDevicesmethods

LinkingTo (2)

RcppArmadillo Rcpp

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (7)

Author

Author

Author

Author

Author

Author

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
unarchivedReturned to CRAN
2025-06-05
1.0.5Latest
record
2025-06-05 · current release · diff ↗
archivedRemoved from CRAN
2025-05-15
requires archived package 'swfscMisc'
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.4
record
2023-05-25 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.0.3
record
2022-08-05 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.0.2
record
2021-07-16 · diff ↗ ·
removed 18 exports
DFFSS, MDFFSS, MG, MNP, MPFSS, MRBFSS, NPFSS, PFSS, UG, UNP, URBFSS, plot_curves_clusters, plot_map, plot_map2, plot_schema, plot_summary, plot_summary_chart, plot_summary_curves

added 3 exports
SpatialScan, plotCurves, plotSummary
1.0.1
record
2021-05-27 · diff ↗
1.0.0
record
2021-05-21
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-05-21
Total releases: 6 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 341 KB / 4 files
Download size: 393 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("HDSpatialScan")

Format

FREVENT, C., AHMED, M., CUCALA, L., DABO-NIANG, S., GENIN, M., SMIDA, Z., & SOULA, J. (2025). HDSpatialScan: Multivariate and Functional Spatial Scan Statistics (Version 1.0.5) [Computer software]. https://doi.org/10.32614/CRAN.package.HDSpatialScan

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for HDSpatialScan version 1.0.5 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →