R Observatory: Metrics for HDMAADMM version 0.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

HDMAADMM

0.0.1

ADMM for High-Dimensional Mediation Models

0packages depend

2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Pei-Shan YenFirst published 2023-11-291 releasesCRAN page ↗GitHub ↗

We use the Alternating Direction Method of Multipliers (ADMM) for parameter estimation in high-dimensional, single-modality mediation models. To improve the sensitivity and specificity of estimated mediation effects, we offer the sure independence screening (SIS) function for dimension reduction. The available penalty options include Lasso, Elastic Net, Pathway Lasso, and Network-constrained Penalty. The methods employed in the package are based on Boyd, S., Parikh, N., Chu, E., Peleato, B., & Eckstein, J. (2011). doi:10.1561/2200000016, Fan, J., & Lv, J. (2008) doi:10.1111/j.1467-9868.2008.00674.x, Li, C., & Li, H. (2008) doi:10.1093/bioinformatics/btn081, Tibshirani, R. (1996) doi:10.1111/j.2517-6161.1996.tb02080.x, Zhao, Y., & Luo, X. (2022) doi:10.4310/21-sii673, and Zou, H., & Hastie, T. (2005) doi:10.1111/j.1467-9868.2005.00503.x.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("HDMAADMM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("psyen0824/HDMAADMM")

Development version from psyen0824/HDMAADMM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hdmaadmm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-HDMAADMM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-HDMAADMM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.2 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

3

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 1 earlier snapshots

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 58 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 75%
Documented parameters: 68%
Return-value docs: 100%
References docs: 14%

Downloads

2K

CRAN downloads in the past year

Rank #17,314 · ~6/day · ~168/mo

Releases R versions

Daily download trend is not available in this view yet.

19230 days

62390 days

2K1 year

Compare downloads with other packages →

Also on385 r2u12 autocran

Repository

GitHub ↗ psyen0824/hdmaadmm

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2024-09-02

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/psyen0824/hdmaadmm on 2026-08-09.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (3)

Rcpp dqrng RcppEigen

LinkingTo (2)

Rcpp RcppEigen

Suggests (1)

roxygen2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Pei-Shan Yen

Author, Maintainer

Authors (2)

Pei-Shan Yen

Author, Maintainer

Ching-Chuan Chen

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.0.1Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2023-11-29
Total releases: 1 / 3 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.0.0
Download size: 17 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("HDMAADMM")

Format

Yen, P., & Chen, C. (2023). HDMAADMM: ADMM for High-Dimensional Mediation Models (Version 0.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.HDMAADMM

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for HDMAADMM version 0.0.1 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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