R Observatory: Metrics for HAPTRACE version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

HAPTRACE

0.1.1

Haplotype-Based Tracking of Admixed Population for Breed Composition Estimation

0packages depend

151downloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Shweta SahooFirst published 2026-07-301 releasesCRAN page ↗

Simulate populations and track haplotypes over generations to evaluate population admixture. The 'HAPTRACE' supports customisable population parameters, including size, number of markers, mutation rates and recombination.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("HAPTRACE", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-haptrace

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-HAPTRACE

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-HAPTRACE

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 4.8 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

5

Dependencies · direct

Check history

OK2026-08-05
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-07-31
6 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 84%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

151

CRAN downloads in the past year

Rank #24,550 · ~0/day · ~13/mo

Releases R versions

Daily download trend is not available in this view yet.

15130 days

15190 days

1511 year

Compare downloads with other packages →

Also on7 r2u7 autocran

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (5)

data.table gdata hsphase Rcpp RcppArmadillo

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Shweta Sahoo

Author, Maintainer

Authors (4)

Shweta Sahoo

Author, Maintainer

Mohammad H. Ferdosi

Author

Sara de las Heras-Saldana

Author

Julius H. J. van der Werf

Author

Package Timeline

1 release. R releases are shown for context.

0.1.1Latest
2026-07-30 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-07-30
Total releases: 1 / 1 yrs
License: GPL (>= 3) OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("HAPTRACE")

Format

Sahoo, S., Ferdosi, M. H., Heras-Saldana, S. d. l., & van der Werf, J. H. J. (2026). HAPTRACE: Haplotype-Based Tracking of Admixed Population for Breed Composition Estimation (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.HAPTRACE

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for HAPTRACE version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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