R Observatory: Metrics for GerminaR version 2.1.7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GerminaR

2.1.7Package record

Indices and Graphics for Assess Seed Germination Process

0packages depend

4.6Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Flavio Lozano-IslaCRAN page ↗GitHub ↗Website ↗Issues ↗

A collection of different indices and visualization techniques for evaluate the seed germination process in ecophysiological studies (Lozano-Isla et al. 2019) doi:10.1111/1440-1703.1275.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GerminaR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("flavjack/germinar")

Development version from flavjack/germinar. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-germinar

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GerminaR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GerminaR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.9 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-07-01
ERROR12 OK, 1 ERROR2026-06-22
OK13 OK2026-06-09

Show 2 earlier changesHide 2 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.1.7

READMEYes · 148 wordsVignettesYes · 3 · dynamicNEWSYes · 100% structured · mentions 2.1.7Citation fileYes · cites a publicationWebsiteYes · pkgdown

Help pages: 24 (1 internal)
Examples that run: 72%13 run in a plain check · 5 never run
Exported functions with examples: 78%
Documented parameters: 100%
Return-value docs: 86%
Help pages citing references: 25%

Vignettes (3)

How these are measured

Downloads

4.6K

CRAN downloads in the past year

Rank #6,650 · ~13/day · ~381/mo

Releases R versions

Daily download trend is not available in this view yet.

59630 days

1.3K90 days

4.6K1 year

Compare downloads with other packages →

Also on94 r2u4 autocran

How downloads are counted

Repository

flavjack/germinar ↗Account: Flavjack

5Stars

3Forks

0Open issues

0Open PRs

9Releases

348Commits

17Commit identities

germianaquantshinyappseed-germinationr-packageinkaverseplant-science

348 commits · Last activity 2026-09-10 · 0% stars, 30d · Default branch at 2.1.7.9000, ahead of CRAN 2.1.7 (checked 2026-10-21) · Discussions: 2 posts

Responsiveness

How these are sampled

PRs merged (all time): not measured
Median days to close, 50 most recently updated closed issues: 0
Median days to close, 50 most recently updated closed PRs: not measured

Stars over time

2024-11-08 · 42026-07-07 · 5

How these are measured

PracticesBeta

10 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/flavjack/germinar on 2026-10-21.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Governance and community (2)

Funding

Funding links: GitHub Sponsors

The repository owner accepts GitHub Sponsors

Docs source (4)

README.qmdpkgdown

GitHub Pages site last deployed 2026-09-10 · The repository has a site deploy workflow

pkgdown site last built 2026-09-10

CRAN release process (1)

cran-comments.md

Show all practicesHide 1 practice

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Installing GerminaR adds 65 packages (34 with compiled code, 58 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB.

Depends (5)

R >= 4.1.0shiny agricolae ggplot2 dplyr

Imports (4)

tidyr tibble purrr DT

LinkingTo (0)

none

Suggests (6)

gsheet cowplot knitr rmarkdown quarto inti

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (8)

Flavio Lozano-Isla

Author, Maintainer since 1.0 (2016)

Omar Benites Alfaro

Author · added in 1.1

Denise Garcia de Santana

Author · added in 1.1

Marcelo F. Pompelli

Author, Thesis advisor

Marli A. Ranal

Author · added in 1.1

Inkaverse

Contributor · added in 2.1.4

Federal Rural University of Pernambuco

Copyright holder · added in 2.1.4

Post Graduate Program

Federal University of Pernambuco

Copyright holder · added in 2.1.4

Register of application

Listed in earlier versions (2)

Omar Benites-Alfaro

no longer listed · 1.0

Flavio Lozano Isla

no longer listed · 1.1 to 1.4.2

Releases (15)

Pick two releases to compare their code metrics.

2.1.7Latest
record
2026-09-10 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
2.1.6
record
2025-10-21 · diff ↗
R
R 4.5.0 released · 2025-04-11
2.1.5
record
2025-03-05 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
2.1.4
record
2022-05-19 · diff ↗
R
R 4.2.0 released · 2022-04-22
2.1.3
record
2021-10-10 · diff ↗ ·
added 1 export
gquant_analysis
2.1.2
record
2021-06-11 · diff ↗ ·
added 1 export
textcolor
R
R 4.1.0 released · 2021-05-18
2.1.1
record
2021-04-23 · diff ↗ ·
added 1 export
webTable
2.0.1
record
2020-10-25 · diff ↗
2.0.0
record
2020-09-01 · diff ↗ ·
removed 11 exports
dtsm, evalDays, evalFactor, ger_cumsum, ger_getdata, ger_leq, ger_linereg, metamorphosis, plot_gr, stat_sm, web_table
R
R 4.0.0 released · 2020-04-24

Show 12 earlier eventsHide 12 earlier events

1.4.2
record
2020-03-28 · diff ↗
1.4
record
2020-03-01 · diff ↗ ·
added 3 exports
metamorphosis, plot_gr, web_table
unarchivedReturned to CRAN
2020-02-17
archivedRemoved from CRAN
2020-02-11
check problems were not corrected in time
R
R 3.6.0 released · 2019-04-26
1.3
record
2019-04-18 · diff ↗ ·
added 1 export
osmp
R
R 3.5.0 released · 2018-04-23
1.2
record
2017-10-25 · diff ↗ ·
added 1 export
stat_sm
R
R 3.4.0 released · 2017-04-21
1.1
record
2017-03-09 · diff ↗ ·
removed 1 export
runGerminaQuant

added 6 exports
GerminaQuant, ger_boxp, ger_getdata, ger_leq, ger_linereg, ger_testcomp
1.0
record
2016-12-24
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-12-24
Total releases: 15 / 10 yrs
License: GPL-3 | file LICENSE OSI · relicensed from MIT + file LICENSE in 2.1.1
Minimum R: ≥ 4.1.0
Bundled data: 0.8 KB / 1 file
Download size: 1.6 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GerminaR")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GerminaR version 2.1.7 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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