R Observatory: Metrics for GenoTriplo version 2.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GenoTriplo

2.2.1

Genotyping Triploids/Tetraploids (or Diploids) from Luminescence Data

0packages depend

2.4Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Julien RocheFirst published 2023-06-308 releasesCRAN page ↗

Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids and tetraploids. Three main functions: Create_Dataset_from_file() to build dataset ; Clustering_parallele_from_dir() that regroups individuals with a same genotype based on proximity and Genotyping_parallele_from_dir() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GenoTriplo", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-genotriplo

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GenoTriplo

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GenoTriplo

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.3 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

18

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.4K

CRAN downloads in the past year

Rank #15,854 · ~6/day · ~197/mo

Releases R versions

Daily download trend is not available in this view yet.

21730 days

66690 days

2.4K1 year

Compare downloads with other packages →

Also on99 r2u16 autocran

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.5.0shinyBS

Imports (17)

cowplot doParallel dplyr DT foreach ggplot2 htmltoolsparallelprocessx rlang Rmixmod shiny shinythemes data.table shinyFiles bslib stringr

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (7)

Maintainer (1)

Julien Roche

Author, Maintainer

Authors (7)

Author, Maintainer

Author

Author

Author

Author

Author

Author

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

2.2.1Latest
2026-07-28 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.3
2025-03-25 · diff ↗
1.1.2
2024-12-04 · diff ↗
1.1.0
2024-07-31 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.4
2024-02-28 · diff ↗
1.0.3
2023-10-03 · diff ↗
1.0.2
2023-09-06 · diff ↗
1.0.1
2023-06-30
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-06-30
Total releases: 8 / 3 yrs
License: GPL
Minimum R: ≥ 3.5.0
Download size: 207 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GenoTriplo")

Format

Roche, J., Allal, F., Besson, M., Haffray, P., Patrice, P., Phocas, F., & Vandeputte, M. (2026). GenoTriplo: Genotyping Triploids/Tetraploids (or Diploids) from Luminescence Data (Version 2.2.1) [Computer software]. https://doi.org/10.32614/CRAN.package.GenoTriplo

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GenoTriplo version 2.2.1 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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