R Observatory: Metrics for GenerateIndexPedigree version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GenerateIndexPedigree

1.0.0Package record

Generate Pedigrees for Index Case Based on US Census Data

0packages depend

1.1Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Katelyn QueenCRAN page ↗GitHub ↗

A series of functions to generate a pedigree around a given person with a known genetic mutation, based on US census data. Pedigree will also track mutation status of all members. Pedigree is built down to children, back to grandparents, and out to cousins. There is also a function to generate pedigrees without genetic mutations.

Changes in 1.0.0

Initial package release including functions 'GenerateIndexPedigree', 'GeneratePedigree', and 'SimulateChildren'

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GenerateIndexPedigree", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("katelynqueen98/GenerateIndexPedigree")

Development version from katelynqueen98/GenerateIndexPedigree. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-generateindexpedigree

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GenerateIndexPedigree

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GenerateIndexPedigree

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 47 s · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK7 OK2026-06-17

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.0

READMEYes · 70 wordsVignettesNoNEWSYes · 67% structured · mentions 1.0.0Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 3
Examples that run: 100%3 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 100%

How these are measured

Downloads

1.1K

CRAN downloads in the past year

Rank #18,779 · ~3/day · ~91/mo

Releases R versions

Daily download trend is not available in this view yet.

24030 days

70490 days

1.1K1 year

Compare downloads with other packages →

Also on19 r2u1 autocran

How downloads are counted

Repository

katelynqueen98/generateindexpedigree ↗Account: katelynqueen98

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-06-22

Responsiveness

not measured

How these are measured

PracticesBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/katelynqueen98/generateindexpedigree on 2026-10-25.

Docs source (1)

README.Rmd

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Installing GenerateIndexPedigree adds 15 packages (9 with compiled code, 5.2 MB of source tarballs). Heaviest: vctrs 1.0 MB, dplyr 902 KB, rlang 766 KB.

Depends (0)

none

Imports (2)

dplyrstats

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Katelyn Queen

Kevin Abuhanna

Author

Paul Spellman

Author, Copyright holder

Releases (1)

1.0.0Latest
record
2026-06-16 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-06-16
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Download size: 10 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GenerateIndexPedigree")

Format

Queen, K., Abuhanna, K., & Spellman, P. (2026). GenerateIndexPedigree: Generate Pedigrees for Index Case Based on US Census Data (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.GenerateIndexPedigree

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GenerateIndexPedigree version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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