R Observatory: Metrics for GenerateIndexPedigree version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GenerateIndexPedigree

1.0.0

Generate Pedigrees for Index Case Based on US Census Data

0packages depend

483downloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Katelyn QueenFirst published 2026-06-171 releasesCRAN page ↗GitHub ↗

A series of functions to generate a pedigree around a given person with a known genetic mutation, based on US census data. Pedigree will also track mutation status of all members. Pedigree is built down to children, back to grandparents, and out to cousins. There is also a function to generate pedigrees without genetic mutations.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GenerateIndexPedigree", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("katelynqueen98/GenerateIndexPedigree")

Development version from katelynqueen98/GenerateIndexPedigree. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-generateindexpedigree

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GenerateIndexPedigree

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GenerateIndexPedigree

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 50 s · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

2

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-17
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 70 wordsVignettesNopkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 100%

Downloads

483

CRAN downloads in the past year

Rank #22,256 · ~1/day · ~40/mo

Releases R versions

Daily download trend is not available in this view yet.

14530 days

48390 days

4831 year

Compare downloads with other packages →

Also on12 r2u

Repository

GitHub ↗ katelynqueen98/generateindexpedigree

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-06-22

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/katelynqueen98/generateindexpedigree on 2026-08-16.

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (0)

none

Imports (2)

dplyrstats

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Katelyn Queen

Author, Maintainer, Copyright holder

Authors (3)

Katelyn Queen

Author, Maintainer, Copyright holder

Kevin Abuhanna

Author

Paul Spellman

Author, Copyright holder

Copyright holders (2)

Katelyn Queen

Author, Maintainer, Copyright holder

Paul Spellman

Author, Copyright holder

Package Timeline

1 release. R releases are shown for context.

1.0.0Latest
2026-06-17 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-06-17
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Download size: 10 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GenerateIndexPedigree")

Format

Queen, K., Abuhanna, K., & Spellman, P. (2026). GenerateIndexPedigree: Generate Pedigrees for Index Case Based on US Census Data (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.GenerateIndexPedigree

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GenerateIndexPedigree version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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