R Observatory: Metrics for GeneReg version 1.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2019-01-26. Its history is shown below.

Reason: check problems were not corrected despite reminders

Details below reflect version 1.1.2, its last release before removal.

GeneReg

1.1.2Package record

Construct time delay gene regulatory network

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Tao HuangCRAN page ↗Website ↗

GeneReg is an R package for inferring time delay gene regulatory network using time course gene expression profiles. The main idea of time delay linear model is to fit a linear regression model using a set of putative regulators to estimate the transcription pattern of a specific target gene.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/GeneReg/GeneReg_1.1.2.tar.gz"
pkgFile <- "GeneReg_1.1.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.1.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1.2

READMENoVignettesNoNEWSNoCitation fileNoWebsiteYes

Help pages: 10includes a package overview page
Examples that run: no examples
Exported functions with examples: 0%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 80%

How these are measured

Downloads

GeneReg Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

How downloads are counted

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (2)

splinesigraph

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Tao Huang

Contributor

Maintainer since 1.0 (2009)

Releases (4)

Pick two releases to compare their code metrics.

R
R 3.6.0 released · 2019-04-26
archivedRemoved from CRAN
2019-01-26
check problems were not corrected despite reminders
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
1.1.2
record
2010-09-01 · diff ↗ ·
added 1 export
pattern:.
R
R 2.11.0 released · 2010-04-22
1.1.1
record
2009-12-14 · diff ↗
R
R 2.10.0 released · 2009-10-26

Show 3 earlier eventsHide 3 earlier events

1.1.0
record
2009-09-09 · diff ↗
1.0
record
2009-06-05
R
R 2.9.0 released · 2009-04-17

Package metadata

First published: 2009-06-05
Total releases: 4 / 17 yrs
License: LGPL
Bundled data: 577 KB / 3 files

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GeneReg")

Format

Huang, T. (n.d.). GeneReg: Construct time delay gene regulatory network (Version 1.1.2) [Computer software]. Retrieved October 27, 2026, from https://CRAN.R-project.org/package=GeneReg

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GeneReg version 1.1.2 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →