R Observatory: Metrics for GenePopStats version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GenePopStats

0.1.0Package record

Population Genetics Statistics for Selective Sweep

0packages depend

4.9Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Abhik SarkarCRAN page ↗

Selective Sweep can be calculated by five significant Population Genetics Statistics such as "Pi", "Wattersons_theta", "Tajima_D", "Kelly_ZnS" and "Omega" Statistics in specified chromosomal region. It has been developed by using the concept of "Kern" and "Schrider" (2018)doi:10.1534/g3.118.200262.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)

install.packages("GenePopStats", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-genepopstats

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GenePopStats

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.6 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 1
Examples that run: 100%1 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

4.9K

CRAN downloads in the past year

Rank #16,423 · ~13/day · ~408/mo

Releases R versions

Daily download trend is not available in this view yet.

28630 days

75090 days

4.9K1 year

Compare downloads with other packages →

Also on53 r2u

How downloads are counted

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Installing GenePopStats adds 26 packages (16 with compiled code, 28 MB of source tarballs). Heaviest: stringi 11 MB, pinfsc50 3.3 MB, Rcpp 1.8 MB.

Depends (0)

none

Imports (1)

vcfR

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (11)

Abhik Sarkar

Author, Maintainer since 0.1.0 (2025)

Neeraj Budhlakoti

Author

Krishna Kumar Chaturvedi

Author

Author

Author

Author

Author

Dwijesh Chandra Mishra

Author

Ranjit Kumar Paul

Author

Dipro Sinha

Author

Md Yeasin

Author

Releases (1)

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
record
2025-09-16 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-09-16
Total releases: 1 / 1 yrs
License: GPL-3 OSI
Download size: 220 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GenePopStats")

Format

Sarkar, A., Budhlakoti, N., Chaturvedi, K. K., Das, S., Jha, G. K., Kumar, S., Lal, S. B., Mishra, D. C., Paul, R. K., Sinha, D., & Yeasin, M. (2025). GenePopStats: Population Genetics Statistics for Selective Sweep (Version 0.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.GenePopStats

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GenePopStats version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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