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GenePopStats

Population Genetics Statistics for Selective Sweep

v0.1.0 · Sep 15, 2025 · GPL-3

Description

Selective Sweep can be calculated by five significant Population Genetics Statistics such as "Pi", "Wattersons_theta", "Tajima_D", "Kelly_ZnS" and "Omega" Statistics in specified chromosomal region. It has been developed by using the concept of "Kern" and "Schrider" (2018)<doi:10.1534/g3.118.200262>.

Downloads

CRAN

432

Last 30 days

9878th

1.4K

Last 90 days

4.5K

Last year

Trend: -4.2% (30d vs prior 30d)

r2u CRAN

0

Last 30 days

18

Last 90 days

50

Last year

Trend: -100% (30d vs prior 30d)

CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code

Structure

Lines of code

216

Files

7

Compiled share

0%

Has compiled src

No

Language breakdown

R 187 (86.6%)Docs 29 (13.4%)

API

Exported functions

1

Internal functions

0

Recent export changes

v0.1.0+1 GenePopStats

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

No

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

System requirements

C++ standard

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

1

First release

2025-09-16

Latest release

2025-09-16

Avg cadence

Cold removal rate

Dep drift

0

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies vcfR GenePopStats

Version History

1 tracked
new 0.1.0 Mar 10, 2026

R Observatory began tracking this package on Mar 10, 2026; it first appeared on CRAN Sep 16, 2025. Releases before tracking aren’t shown.