R Observatory: Metrics for GWASinspector version 1.7.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GWASinspector

1.7.4

Comprehensive and Easy to Use Quality Control of GWAS Results

0packages depend

6.4Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Alireza AniFirst published 2019-08-0224 releasesCRAN page ↗

When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GWASinspector", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gwasinspector

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GWASinspector

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GWASinspector

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.8 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

15

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: not tracked
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

6.4K

CRAN downloads in the past year

Rank #11,488 · ~17/day · ~530/mo

Releases R versions

Daily download trend is not available in this view yet.

21230 days

85790 days

6.4K1 year

Compare downloads with other packages →

Also on129 r2u23 autocran

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.2

Imports (15)

ini logger data.table hashtoolsggplot2 knitr rmarkdown gridExtragridRSQLite kableExtra (>= 0.8)methodsR.utils openxlsx

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Alireza Ani

Author, Maintainer

Authors (4)

Alireza Ani

Author, Maintainer

Ilja M. Nolte

Author

Ahmad Vaez

Author

Peter J. van der Most

Author

Package Timeline

24 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.7.4Latest
2026-01-29 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
1.7.3
2025-03-30 · diff ↗
1.7.1
2024-05-06 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.6.5
2023-09-27 · diff ↗
1.6.4
2023-05-15 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.6.1
2023-01-09 · diff ↗
1.6.0
2022-11-22 · diff ↗
1.5.7.2
2022-04-27 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.5.7.1
2022-01-16 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.5.2
2021-03-22 · diff ↗

Show 16 earlier events

1.5.1
2021-02-08 · diff ↗
1.4.8.2
2020-10-01 · diff ↗
1.4.8
2020-07-28 · diff ↗
1.4.7.1
2020-05-11 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.4.7
2020-04-22 · diff ↗
1.4.6.7
2020-03-31 · diff ↗
1.4.6
2020-03-23 · diff ↗
1.4.5
2020-03-15 · diff ↗
1.4.4
2020-02-25 · diff ↗
1.4.3
2020-02-18 · diff ↗
1.4.2
2020-01-19 · diff ↗
1.3.4
2019-12-01 · diff ↗
1.2
2019-09-25 · diff ↗
1.1.2
2019-08-02
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2019-08-02
Total releases: 24 / 7 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.2
Download size: 578 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GWASinspector")

Format

Ani, A., Nolte, I. M., Vaez, A., & van der Most, P. J. (2026). GWASinspector: Comprehensive and Easy to Use Quality Control of GWAS Results (Version 1.7.4) [Computer software]. https://doi.org/10.32614/CRAN.package.GWASinspector

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GWASinspector version 1.7.4 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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