R Observatory: Metrics for GWASinlps version 2.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GWASinlps

2.5

Non-Local Prior Based Iterative Variable Selection Tool for Genome-Wide Association Studies

0packages depend

2.9Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Nilotpal SanyalFirst published 2017-11-109 releasesCRAN page ↗GitHub ↗

Performs variable selection with data from Genome-wide association studies (GWAS), or other high-dimensional data with continuous, binary or survival outcomes, combining in an iterative framework the computational efficiency of the structured screen-and-select variable selection strategy based on some association learning and the parsimonious uncertainty quantification provided by the use of non-local priors (see Sanyal et al., 2019 DOI:10.1093/bioinformatics/bty472).

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("GWASinlps", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("nilotpalsanyal/GWASinlps")

Development version from nilotpalsanyal/GWASinlps. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gwasinlps

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GWASinlps

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.9 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

5

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 533 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 94%
Return-value docs: 100%
References docs: 100%

Downloads

2.9K

CRAN downloads in the past year

Rank #11,224 · ~8/day · ~239/mo

Releases R versions

Daily download trend is not available in this view yet.

22230 days

86890 days

2.9K1 year

Compare downloads with other packages →

Also on422 r2u15 autocran

Repository

GitHub ↗ nilotpalsanyal/gwasinlps

0Stars

0Forks

0Open issues

1Open PRs

0Releases

gwashigh-dimensionalvariable-selectionnon-local-prior

Last activity 2026-01-22

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/nilotpalsanyal/gwasinlps on 2026-08-16.

Continuous integration (1)

GitHub Actions

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (1)

modelSelection

Imports (4)

Rcpp RcppArmadillo fastglmsurvival

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (1)

glmnet

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Nilotpal Sanyal

Author, Maintainer

Authors (1)

Nilotpal Sanyal

Author, Maintainer

Package Timeline

9 releases. Pick two to compare their code metrics. R releases are shown for context.

2.5Latest
2026-07-18 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
2.4
2025-10-29 · diff ↗
unarchivedReturned to CRAN
2025-10-29
archivedRemoved from CRAN
2025-10-10
requires archived package 'horseshoe'
R
R 4.5.0 released · 2025-04-11
2.3
2024-10-20 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
2.2
2022-11-23 · diff ↗
2.1
2022-09-17 · diff ↗
2.0
2022-09-14 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26

Show 5 earlier events

1.2
2018-07-19 · diff ↗
R
R 3.5.0 released · 2018-04-23
1.1
2018-02-02 · diff ↗
1.0
2017-11-10
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-11-10
Total releases: 9 / 9 yrs
License: GPL (>= 2) OSI
Download size: 46 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GWASinlps")

Format

Sanyal, N. (2026). GWASinlps: Non-Local Prior Based Iterative Variable Selection Tool for Genome-Wide Association Studies (Version 2.5) [Computer software]. https://doi.org/10.32614/CRAN.package.GWASinlps

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GWASinlps version 2.5 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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