R Observatory: Metrics for GUTS version 1.2.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GUTS

1.2.6Package record

Fast Calculation of the Likelihood of a Stochastic Survival Model

0packages depend

4.2Kdownloads / year

79.3%test coverage

13/13flavors OK

Overview

About

Maintained by Oliver JakobyCRAN page ↗

Given exposure and survival time series as well as parameter values, GUTS allows for the fast calculation of the survival probabilities as well as the logarithm of the corresponding likelihood (see Albert, C., Vogel, S. and Ashauer, R. (2016) doi:10.1371/journal.pcbi.1004978).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GUTS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-guts

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GUTS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GUTS

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.2 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK12 OK2026-04-25
NOTE12 OK, 2 NOTE2026-04-22
ERROR11 OK, 2 NOTE, 1 ERROR2026-04-18

Show 3 earlier changesHide 3 earlier changes

NOTE12 OK, 2 NOTE2026-04-06
ERROR11 OK, 2 NOTE, 1 ERROR2026-04-04
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.2.6

READMENoVignettesYes · 2 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 3includes a package overview page
Examples that run: 100%1 run in a plain check
Exported functions with examples: 100%
Documented parameters: 65%
Return-value docs: 100%
Help pages citing references: 67%

Vignettes (2)

How these are measured

Downloads

4.2K

CRAN downloads in the past year

Rank #7,935 · ~12/day · ~351/mo

Releases R versions

Daily download trend is not available in this view yet.

43330 days

1.2K90 days

4.2K1 year

Compare downloads with other packages →

Also on379 r2u5 autocran

How downloads are counted

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Installing GUTS adds 1 package (1 with compiled code, 1.8 MB of source tarballs). Heaviest: Rcpp 1.8 MB.

Depends (3)

R >= 3.5.0methodsRcpp

Imports (0)

none

LinkingTo (1)

Rcpp

Suggests (7)

knitr rmarkdown adaptMCMC xlsx drc testthat withr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (5)

Oliver Jakoby

Author, Maintainer since 1.1.0 (2019) · added in 1.1.0

Carlo Albert

Author

Dirk Nickisch

Author · added in 1.1.1

Alexander Singer

Author · added in 1.1.0

Sören Vogel

Author

Previously maintained by Sören Vogel (0.1 to 1.0.4).

Releases (21)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
1.2.6Latest
record
2025-09-02 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.2.5
record
2023-10-20 · diff ↗
1.2.4
record
2023-10-12 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.2.3
record
2022-02-26 · diff ↗
1.2.2
record
2022-02-01 · diff ↗
unarchivedReturned to CRAN
2022-01-21
1.2.1
record
2022-01-21 · diff ↗
archivedRemoved from CRAN
2021-12-19
check problems were not corrected in time
1.2
record
2021-12-02 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24

Show 24 earlier eventsHide 24 earlier events

1.1.1
record
2019-07-05 · diff ↗ ·
added 2 exports
guts_report_sppe, guts_report_squares
R
R 3.6.0 released · 2019-04-26
1.1.0
record
2019-02-12 · diff ↗ ·
removed 1 export
pattern:^[^\\.]

added 4 exports
guts_setup, guts_calc_loglikelihood, guts_calc_survivalprobs, guts_report_damage
R
R 3.5.0 released · 2018-04-23
1.0.4
record
2017-10-10 · diff ↗
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.0.0
record
2015-06-26 · diff ↗
0.9.3
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2015-05-15 · diff ↗
0.9.1
record
2015-05-06 · diff ↗ ·
removed 1 export
pattern:^[[:alpha:]]+

added 1 export
pattern:^[^\\.]
R
R 3.2.0 released · 2015-04-16
0.5.2
record
2015-04-12 · diff ↗
0.4.14
record
2015-04-03 · diff ↗
0.4.12
record
2015-04-02 · diff ↗
0.3.5
record
2014-05-05 · diff ↗
R
R 3.1.0 released · 2014-04-10
0.3.3
record
2014-03-27 · diff ↗
R
R 3.0.0 released · 2013-04-03
0.2.8
record
2012-07-12 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
0.1.45
record
2011-06-22 · diff ↗ ·
added 1 export
pattern:^[[:alpha:]]+
0.1
record
2011-06-17
R
R 2.13.0 released · 2011-04-13

Package metadata

First published: 2011-06-17
Total releases: 21 / 15 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5.0
Bundled data: 0.5 KB / 1 file
Download size: 2.7 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GUTS")

Format

Jakoby, O., Albert, C., Nickisch, D., Singer, A., & Vogel, S. (2025). GUTS: Fast Calculation of the Likelihood of a Stochastic Survival Model (Version 1.2.6) [Computer software]. https://doi.org/10.32614/CRAN.package.GUTS

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GUTS version 1.2.6 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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