R Observatory: Metrics for GSelection version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GSelection

0.1.0Package record

Genomic Selection

0packages dependsuggested by 1

2.4Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Sayanti Guha MajumdarCRAN page ↗

Genomic selection is a specialized form of marker assisted selection. The package contains functions to select important genetic markers and predict phenotype on the basis of fitted training data using integrated model framework (Guha Majumdar et. al. (2019) doi:10.1089/cmb.2019.0223) developed by combining one additive (sparse additive models by Ravikumar et. al. (2009) doi:10.1111/j.1467-9868.2009.00718.x) and one non-additive (hsic lasso by Yamada et. al. (2014) doi:10.1162/NECO_a_00537) model.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GSelection", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gselection

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GSelection

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GSelection

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Sayanti Guha Majumdar <sayanti23gm@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = c("Sayanti", "Guha"),
                      family = "Majumdar",
                      role = c("aut", "cre"),
                      email = "sayanti23gm@gmail.com"),
               person(given = "Anil",
                      family = "Rai",
                      role = "aut"),
               person(given = c("Dwijesh", "Chandra"),
                      family = "Mishra",
                      role = "aut"))
as necessary.

CRAN check page ↗

Slowest check: 1.7 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 9includes a package overview page
Examples that run: 100%8 run in a plain check
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 89%

How these are measured

Downloads

2.4K

CRAN downloads in the past year

Rank #18,582 · ~7/day · ~202/mo

Releases R versions

Daily download trend is not available in this view yet.

27530 days

69890 days

2.4K1 year

Compare downloads with other packages →

Also on84 r2u3 autocran65 c2d4u

How downloads are counted

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Installing GSelection adds 7 packages (6 with compiled code, 5.5 MB of source tarballs). Heaviest: Rcpp 1.8 MB, RcppEigen 1.7 MB, RcppArmadillo 1.0 MB.

Depends (1)

R >= 3.5

Imports (5)

SAM penalized gdatastatsutils

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

UBayFS

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (3)

Sayanti Guha Majumdar

Anil Rai

Dwijesh Chandra Mishra

Maintainer since 0.1.0 (2019)

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.1.0Latest
record
2019-11-04 · current release
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2019-11-04
Total releases: 1 / 7 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5
Bundled data: 2.5 KB / 1 file
Download size: 15 KB

Appears in task views

Agricultural Science

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GSelection")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GSelection version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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