R Observatory: Metrics for GSelection version 0.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GSelection

0.1.0

Genomic Selection

1packages depend

2.3Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Sayanti Guha MajumdarFirst published 2019-11-041 releasesCRAN page ↗

Genomic selection is a specialized form of marker assisted selection. The package contains functions to select important genetic markers and predict phenotype on the basis of fitted training data using integrated model framework (Guha Majumdar et. al. (2019) doi:10.1089/cmb.2019.0223) developed by combining one additive (sparse additive models by Ravikumar et. al. (2009) doi:10.1111/j.1467-9868.2009.00718.x) and one non-additive (hsic lasso by Yamada et. al. (2014) doi:10.1162/NECO_a_00537) model.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GSelection", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gselection

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GSelection

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GSelection

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.8 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

5

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 89%

Downloads

2.3K

CRAN downloads in the past year

Rank #18,216 · ~6/day · ~192/mo

Releases R versions

Daily download trend is not available in this view yet.

15230 days

60390 days

2.3K1 year

Compare downloads with other packages →

Also on114 r2u8 autocran25 c2d4u

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (5)

SAM penalized gdatastatsutils

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

UBayFS

Code & Tests

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (3)

Sayanti Guha Majumdar

no longer listed · 0.1.0

Dwijesh Chandra Mishra

no longer listed · 0.1.0

Anil Rai

no longer listed · 0.1.0

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2019-11-04
Total releases: 1 / 7 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5
Bundled data: 2.5 KB / 1 file
Download size: 15 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Agricultural Science

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GSelection")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GSelection version 0.1.0 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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