R Observatory: Metrics for GSEMA version 0.99.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GSEMA

0.99.4

Gene Set Enrichment Meta-Analysis

0packages depend

2.6Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Juan Antonio Villatoro-GarcíaFirst published 2024-10-142 releasesCRAN page ↗

Performing the different steps of gene set enrichment meta-analysis. It provides different functions that allow the application of meta-analysis based on the combination of effect sizes from different pathways in different studies to obtain significant pathways that are common to all of them.

Install

R (CRAN)Ubuntu (r2u)

install.packages("GSEMA", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-gsema

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 9.7 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

18

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-07-26
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-19
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-07-18
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 22 earlier snapshots

ERROR2026-07-16
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-07-03
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-01
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-27
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-21
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-18
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-04
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-01
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-30
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-24
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-22
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-17
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-15
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-03
11 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE
OK2026-04-30
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-30
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-19
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-12
12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 92%
Return-value docs: 100%
References docs: 83%

Downloads

2.6K

CRAN downloads in the past year

Rank #14,867 · ~7/day · ~216/mo

Releases R versions

Daily download trend is not available in this view yet.

27030 days

69690 days

2.6K1 year

Compare downloads with other packages →

Also on204 r2u

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.4

Imports (18)

Biobase limma Rdpack GSVA progress pbapply doParallelparallelBiocParallel metafor RColorBrewer pheatmapmethodsscales plyrgrDevicesstatsimpute

LinkingTo (0)

none

Suggests (6)

BiocStyle qpdf BiocGenerics RUnit knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Juan Antonio Villatoro-García

Author, Maintainer

Authors (3)

Juan Antonio Villatoro-García

Author, Maintainer

Pedro Carmona-Sáez

Author

Pablo Jurado-Bascón

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.99.4Latest
2025-10-16 · current release · diff ↗
unarchivedReturned to CRAN
2025-10-16
archivedRemoved from CRAN
2025-10-11
multiple policy violations Spammed personal address in HTML Requires package unavailable in mainstream repository
R
R 4.5.0 released · 2025-04-11
0.99.3
2024-10-14
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-10-14
Total releases: 2 / 2 yrs
License: GPL-2 OSI
Minimum R: ≥ 4.4
Bundled data: 3.2 MB / 2 files
Download size: 3.6 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Meta-Analysis

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GSEMA")

Format

Villatoro-García, J. A., Carmona-Sáez, P., & Jurado-Bascón, P. (2025). GSEMA: Gene Set Enrichment Meta-Analysis (Version 0.99.4) [Computer software]. https://doi.org/10.32614/CRAN.package.GSEMA

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GSEMA version 0.99.4 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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